Browse Element(s) Details


Os.33454.1.S1_at

Description gb:AY332472.1
DB_XREF= gi:33242908
GEN=PK1
TID=Os.33454.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33454 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transmembrane kinase (PK1) mRNA, complete cds.
PROD=transmembrane kinase
FL= gb:AY332472.1 gb:AK100525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1090011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10850Os.1406.1.S1_at11/111+5786135..5787911Peroxidase family protein, expressed
LOC_Os01g10860Os.1408.1.S1_at11/111+5791551..5794476expressed protein
LOC_Os01g10860OsAffx.5984.1.S1_s_at1/111+5791551..5794476expressed protein
LOC_Os01g10870OsAffx.11003.1.S1_s_at11/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.11003.2.S1_at9/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10870OsAffx.9832.1.S1_x_at1/111+5796409..5797944CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10880NANA1+5804847..5805142expressed protein
LOC_Os01g10890Os.1411.1.S1_at11/111+5806391..5808419CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os01g10900Os.33454.1.S1_at11/111+5811629..5816009Leucine Rich Repeat family protein, expressed
LOC_Os01g10910Os.43764.1.A1_at5/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.7.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.2.S1_x_at3/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10910OsAffx.24046.3.S1_x_at1/111+5817057..5819308hAT family dimerisation domain containing protein
LOC_Os01g10920OsAffx.11852.2.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_x_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10920OsAffx.11852.1.S1_at11/111+5820671..5825053Peptide-N4-asparagine amidase A, putative
LOC_Os01g10930Os.32657.1.S1_at11/111+5825355..5827630Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10940NANA1+5830415..5830909S-adenosylmethionine synthetase 1, putative
LOC_Os01g10950Os.14564.1.S1_at11/111+5834398..5836700Peptide-N4-asparagine amidase A, putative, expressed
LOC_Os01g10960Os.34020.2.S1_at4/111+5838538..5840376Peptide-N4-asparagine amidase A, putative

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33454.1.S1_at--964--291Chr01:5812366..5812390 (25 bp)
ATAGCAGCAGCCGTTCTGAATGTCC
LOC_Os01g10900
Os.33454.1.S1_at--173--2991Chr01:5812348..5812372 (25 bp)
AATGTCCTCCTGATATCGCGAGCAA
LOC_Os01g10900
Os.33454.1.S1_at--989--4611Chr01:5812331..5812355 (25 bp)
GCGAGCAACGTCTACTGCTTTGGCA
LOC_Os01g10900
Os.33454.1.S1_at--87--4891Chr01:5812315..5812339 (25 bp)
GCTTTGGCACGCTTCTGATAGAGAT
LOC_Os01g10900
Os.33454.1.S1_at--548--6431Chr01:5812293..5812317 (25 bp)
GATCATATCCGGAAAGCTCCCTGAA
LOC_Os01g10900
Os.33454.1.S1_at--895--5151Chr01:5812130..5812270 (25 bp)
GCAACTGGGCCGCTGAGTATCTGAA
LOC_Os01g10900
Os.33454.1.S1_at--945--9351Chr01:5812082..5812106 (25 bp)
TCGACGCGTCGCTGAAGGAACACAA
LOC_Os01g10900
Os.33454.1.S1_at--1153--971Chr01:5812022..5812046 (25 bp)
AGGAGTGCATTGATCCCGACTCAGA
LOC_Os01g10900
Os.33454.1.S1_at--161--7491Chr01:5811904..5811928 (25 bp)
GTGGGCTGAGCTCGAGATACTCTCT
LOC_Os01g10900
Os.33454.1.S1_at--754--8611Chr01:5811836..5811860 (25 bp)
TGGTGAACCAATACTCGCGGCAGCA
LOC_Os01g10900
Os.33454.1.S1_at--351--4971Chr01:5811814..5811838 (25 bp)
GCATCCCTCTTCACAAGGCTAAAGG
LOC_Os01g10900
Target Sequence 
ATAGCAGCAGCCGTTCTGAATGTCCTCCTGATATCGCGAGCAACGTCTACTGCTTTGGCACGCTTCTGATAGAGATCATA
TCCGGAAAGCTCCCTGAAGCAGACGACCAAAAATCCATGTGCAACTGGGCCGCTGAGTATCTGAAGGGCAAGAGCTACAG
CAAGCTCGTCGACGCGTCGCTGAAGGAACACAACGCCAACGAGCTGGAGGCCGTCTGCGAGGTGATTCAGGAGTGCATTG
ATCCCGACTCAGATCAGAGGCCGACGATGAGAGACGCCACCCGCAAGCTGAGACAAGCTCTCAACATCTCGCCGGAGGCA
GCGACGCCGCGGCTCTCGCCTCTCTGGTGGGCTGAGCTCGAGATACTCTCTGCAGAGGCAACCTAGTAGATTGATCAGTG
ATGTATACTGTTGCTGGTGAACCAATACTCGCGGCAGCATCCCTCTTCACAAGGCTAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis