Browse Element(s) Details


Os.33624.3.S1_x_at

Description gb:NM_184866.1
DB_XREF= gi:34896821
TID=Os.33624.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1523_A02.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1523_A02.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4939411/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g4015011/11hypothetical protein
LOC_Os03g2499010/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g2496010/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g308609/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49340OsAffx.26538.1.S1_at10/114+29229721..29233325tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49350Os.15142.1.S1_at11/114+29236771..29239032pentatricopeptide, putative, expressed
LOC_Os04g49360NANA4+29239530..29240504F-box domain containing protein, expressed
LOC_Os04g49370Os.26511.1.S1_at11/114+29246807..29247934expressed protein
LOC_Os04g49380OsAffx.25217.1.S1_x_at9/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49380OsAffx.25217.2.S1_x_at5/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49410Os.2369.1.S1_a_at11/114+29266053..29269509Alpha-expansin 13 precursor, putative, expressed
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed
LOC_Os04g49430OsAffx.4128.1.S1_at11/114+29274839..29279862Regulator of chromosome condensation family protein, expressed
LOC_Os04g49440OsAffx.14343.1.S1_at11/114+29280376..29281215RNA recognition motif, putative, expressed
LOC_Os04g49450Os.5335.1.S1_at11/114+29281866..29284686myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33624.3.S1_x_at--1131--6455Chr04:18250507..18250665 (25 bp)
GATAATCATGACCAACATTTTGAGG
LOC_Os04g30860
Os.33624.3.S1_x_at--327--8855Chr04:18250670..18250694 (25 bp)
TGATCCTTTGCTTCATTTAACTAAA
LOC_Os04g30860
Os.33624.3.S1_x_at--11--2314Chr03:22267010..22267034 (25 bp)
AAAGGCCATTTACAGATGACCATAA
LOC_Os03g40150
Os.33624.3.S1_x_at--858--715Chr04:18250889..18250913 (25 bp)
ATGATCTAGTTCTCCATTCTTTGAA
LOC_Os04g30860
Os.33624.3.S1_x_at--229--2694Chr03:22267202..22267226 (25 bp)
AAGCATGCTTGGTGAACAGTCTAAA
LOC_Os03g40150
Os.33624.3.S1_x_at--1087--2995Chr04:18255095..18255119 (25 bp)
AATGATCTTATGAAACACCCTTCAA
LOC_Os04g30860
Os.33624.3.S1_x_at--220--1353Chr04:18255144..18255168 (25 bp)
AGAGTTTTTCTGGAGCATCACTTGC
LOC_Os04g30860
Os.33624.3.S1_x_at--219--4975Chr04:18255158..18255182 (25 bp)
GCATCACTTGCTAGACCAATTGAGA
LOC_Os04g30860
Os.33624.3.S1_x_at--510--7375Chr04:18255186..18255298 (25 bp)
GTGACATGCTGTTTTTCCCAATATT
LOC_Os04g30860
Os.33624.3.S1_x_at--864--4955Chr04:18255299..18255323 (25 bp)
GCATTTGAGGCATTGGTTTCTGTTT
LOC_Os04g30860
Os.33624.3.S1_x_at--200--6815Chr04:18255347..18255370 (24 bp)
GTTTTGTTTTCATTGACTCCTTATT
LOC_Os04g30860
Target Sequence 
GATAATCATGACCAACATTTTGAGGAAAATGATCCTTTGCTTCATTTAACTAAAGAAGAGCTTATGAAGAAATTGAAAAT
AAAGCTTGGTAAAAGGCCATTTACAGATGACCATAAAAAGAAGAGACATAAAGTTGAATCAGACTCAATTATCGATGATG
CATTGTTAGAGATTCACAATGATCTAGTTCTCCATTCTTTGAAAATGAAATTAAGCATGCTTGGTGAACAGTCTAAAAAT
AAGAGAAAAACCTTTGAGAAAGATAACCAACAAGGTTTCTTCATATATAATGATCTTATGAAACACCCTTCAAAAACTAA
TTTTGGAATGGTCCAAAAGAGTTTTTCTGGAGCATCACTTGCTAGACCAATTGAGATATGTGACATGCTGTTTTTCCCAA
TATTGCATTTGAGGCATTGGTTTCTGTTTGTTGTTGATTTGAAAGATGAGAGTTTTGTTTTCATTGACTCCTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33624.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis