Browse Element(s) Details


Os.33648.1.S1_at

Description gb:AK099687.1
DB_XREF= gi:32984896
TID=Os.33648.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33648 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1607A12.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072I04, full insert sequence.
FL= gb:AK099687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0671011/11pentatricopeptide, putative, expressed
LOC_Os04g265901/11hypothetical protein
LOC_Os02g376541/11Lecithin:cholesterol acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06690OsAffx.12757.1.S1_at10/113+3363598..3364368hypothetical protein
LOC_Os03g06700Os.11154.2.S1_x_at7/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06700Os.11154.1.S1_a_at5/113+3381850..3386044Fatty acid elongase, putative, expressed
LOC_Os03g06710Os.33648.1.S1_at11/113+3387100..3393069pentatricopeptide, putative, expressed
LOC_Os03g06720Os.7378.1.S1_at11/113+3396435..3403979expressed protein
LOC_Os03g06730Os.30598.1.S1_at11/113+3404015..3406073expressed protein
LOC_Os03g06730Os.30598.2.S1_x_at11/113+3404015..3406073expressed protein
LOC_Os03g06740Os.9134.1.S1_at10/113+3406654..3411381Glutathione reductase, chloroplast precursor, putative, expressed
LOC_Os03g06750OsAffx.24996.1.S1_at11/113+3412135..3414404expressed protein
LOC_Os03g06760Os.34216.1.S1_x_at11/113+3414135..3418449exocyst complex component Sec15, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33648.1.S1_at--1105--9631Chr03:3389778..3389802 (25 bp)
TCAGGTGGTAGTTCTTCTCGACGTA
LOC_Os03g06710
Os.33648.1.S1_at--1040--9651Chr03:3389814..3389838 (25 bp)
TCAGCTCTGAGGACGCATATTTTTG
LOC_Os03g06710
Os.33648.1.S1_at--228--5571Chr03:3389972..3389996 (25 bp)
GAAAGCACCGTGTTATCTTCAAAAG
LOC_Os03g06710
Os.33648.1.S1_at--923--5851Chr03:3390007..3390031 (25 bp)
GACCACTGTTTGACTGGTGCTCTAA
LOC_Os03g06710
Os.33648.1.S1_at--23--6451Chr03:3390054..3390078 (25 bp)
GATCAGGCTAGATTACCGCAGGGAT
LOC_Os03g06710
Os.33648.1.S1_at--995--7971Chr03:3392794..3392814 (21 bp)
GGATGCAGGATTATACTCCGGGCTA
LOC_Os03g06710
Os.33648.1.S1_at--278--9291Chr03:3392806..3392830 (25 bp)
TCCGGGCTAGGAGATGCTGCTGACA
LOC_Os03g06710
Os.33648.1.S1_at--866--4771Chr03:3392821..3392845 (25 bp)
GCTGCTGACATATGGTGTGCTCAAA
LOC_Os03g06710
Os.33648.1.S1_at--730--7891Chr03:3392901..3392925 (25 bp)
GGTTCACCTCAGCTGGCTACTGAAA
LOC_Os03g06710
Os.33648.1.S1_at--205--91310Chr06:1666444..1666881 (25 bp)
TGCGTTCTTTTCAGGCTAGTCGTCA
NONE
Os.33648.1.S1_at--732--3691Chr03:3392983..3393007 (25 bp)
CTAGTCGTCATCGTTTTCCGTTAGC
LOC_Os03g06710
Target Sequence 
TCAGGTGGTAGTTCTTCTCGACGTATTAGTGATAATTCAGCTCTGAGGACGCATATTTTTGACATTGGCAATTCCAAGAG
TGGCAAAAGAAATACAAGAAAGCATGTAACTTCATAAATATTTCGAGTCTAACTGGTTTAACATCTTCGATGTTGACACA
ACACGGTGATGATCCATCTACTAAACAGTTGATGGAAAGCACCGTGTTATCTTCAAAAGAAAACCCCATGACCACTGTTT
GACTGGTGCTCTAAGAATGTGGTGAAATTTCCAATGGATCAGGCTAGATTACCGCAGGGATGCAGGATTATACTCCGGGC
TAGGAGATGCTGCTGACATATGGTGTGCTCAAAGATGAGATGGGTGTGATACCTGTGATCAATGGATGATACGCATCATT
GCTGGTCTGGTTCACCTCAGCTGGCTACTGAAAGCTCTGCAGCTAGCTCTGCCATCTCCCACGTCAAGCTGAGGCTGCGT
TCTTTTCAGGCTAGTCGTCATCGTTTTCCGTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33648.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis