Browse Element(s) Details


Os.33702.1.S1_x_at

Description gb:AK099431.1
DB_XREF= gi:32984640
TID=Os.33702.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33702 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative DNA-directed DNA polymerase homolog (P0625E02.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013012F23, full insert sequence.
FL= gb:AK099431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4728011/11DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g108601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os07g47280Os.33702.1.S1_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47280Os.33702.1.S1_x_at11/117+28256725..28258715DNA polymerase zeta catalytic subunit, putative, expressed
LOC_Os07g47290Os.11026.1.S1_at11/117+28270621..28274933Xylose isomerase, putative, expressed
LOC_Os07g47300Os.9678.1.S1_at11/117+28275827..28279366GTP1/OBG family protein, putative, expressed
LOC_Os07g47310OsAffx.16747.1.S1_at10/117+28281177..28284162hypothetical protein
LOC_Os07g47310Os.46481.2.S1_x_at1/117+28281177..28284162hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0009411biological_processresponse to UV
GO:0016035cellular_componentzeta DNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003894molecular_functionzeta DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33702.1.S1_x_at--888--7771Chr07:28256824..28256848 (25 bp)
GGTGCTCAGCGTGCGGATCGTCTCC
LOC_Os07g47280
Os.33702.1.S1_x_at--104--9871Chr07:28256894..28257053 (25 bp)
TACAGCCACTTCCACGGCGGAGAGG
LOC_Os07g47280
Os.33702.1.S1_x_at--866--3971Chr07:28257066..28257090 (25 bp)
CGGTGATCAGGATCTACGGCTCCAC
LOC_Os07g47280
Os.33702.1.S1_x_at--1020--7251Chr07:28257774..28257798 (25 bp)
GTCCTTCCATTTCTGTATGTACCTT
LOC_Os07g47280
Os.33702.1.S1_x_at--974--8751Chr07:28257791..28257815 (25 bp)
TGTACCTTGCAAAGAGGACCTTCTT
LOC_Os07g47280
Os.33702.1.S1_x_at--835--6172Chr07:28257804..28257828 (25 bp)
GAGGACCTTCTTCATAACGTCGAAA
LOC_Os07g47280
Os.33702.1.S1_x_at--108--5571Chr07:28258476..28258576 (25 bp)
GAAAGCTTTGCAGATTCGCAGCTCA
LOC_Os07g47280
Os.33702.1.S1_x_at--1032--5031Chr07:28258562..28258585 (24 bp)
GCAGATTCGCAGCTCATCAAAAAAG
LOC_Os07g47280
Os.33702.1.S1_x_at--1088--4991Chr07:28258588..28258612 (25 bp)
GCATGTGCATGGATGTACCCTTGTT
LOC_Os07g47280
Os.33702.1.S1_x_at--727--7992Chr07:28258598..28258622 (25 bp)
GGATGTACCCTTGTTCGAGCAAAAA
LOC_Os07g47280
Os.33702.1.S1_x_at--728--10091Chr07:28258628..28258652 (25 bp)
TATGGCTATCATACATCTGAGGAAC
LOC_Os07g47280
Target Sequence 
GGTGCTCAGCGTGCGGATCGTCTCCCTCGACTACTACATGGCGCCGCCCCTCCCCGGATTCGACTTCTCCTACAGCCACT
TCCACGGCGGAGAGGTGGAGGAGGTGCCGGTGATCAGGATCTACGGCTCCACCCCCGCGGGGCAGAAGACTTGCCTCCAC
ATCCATCGGGTCCTTCCATTTCTGTATGTACCTTGCAAAGAGGACCTTCTTCATAACGTCGAAAAAGGTAATTCATTTAT
ATCTGGTCTATTGAGTGATCTTGAGAAAGCTTTGCAGATTCGCAGCTCATCAAAAAAGAAGCATGTGCATGGATGTACCC
TTGTTCGAGCAAAAAAGTTGTATGGCTATCATACATCTGAGGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33702.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis