Browse Element(s) Details


Os.33762.1.S1_at

Description gb:AK099094.1
DB_XREF= gi:32984303
TID=Os.33762.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019B18, full insert sequence.
FL= gb:AK061588.1 gb:AK099094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1116011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11140NANA1+5958496..5962542retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g11150Os.30473.1.S1_at11/111+5965621..5969291oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g11160Os.33762.1.S1_at11/111+5980426..5982677Amino acid permease family protein, expressed
LOC_Os01g11170OsAffx.9936.2.S1_at11/111+5987755..5988636expressed protein
LOC_Os01g11190OsAffx.23196.1.S1_at9/111+5991588..5992257hypothetical protein
LOC_Os01g11200OsAffx.23197.1.S1_at11/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23197.2.S1_at10/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.11754.1.S1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11200OsAffx.23846.1.A1_at1/111+5997135..5999660Myb-like DNA-binding domain containing protein
LOC_Os01g11210Os.31675.1.S1_at11/111+6000326..6001671expressed protein
LOC_Os01g11210Os.31675.2.S1_x_at10/111+6000326..6001671expressed protein
LOC_Os01g11220OsAffx.9933.1.S1_at9/111+6001842..6003965expressed protein
LOC_Os01g11230Os.9306.1.S1_at11/111+6004660..6005829SOUL, putative, expressed
LOC_Os01g11240Os.12788.1.S1_at11/111+6007539..6008696expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015802biological_processbasic amino acid transport
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33762.1.S1_at--587--5091Chr01:5980947..5980971 (25 bp)
GCACGCTCGGCATCCAGCTTCTGGT
LOC_Os01g11160
Os.33762.1.S1_at--662--411Chr01:5980786..5980810 (25 bp)
ATCATGCTGCTCTACTACGTGCTCG
LOC_Os01g11160
Os.33762.1.S1_at--553--991Chr01:5980701..5980725 (25 bp)
AGGAGGTCTACGCTGATGCCGCCCA
LOC_Os01g11160
Os.33762.1.S1_at--597--6351Chr01:5980687..5980711 (25 bp)
GATGCCGCCCACGTGGACGATGCGA
LOC_Os01g11160
Os.33762.1.S1_at--258--8371Chr01:5980622..5980646 (25 bp)
GGCGGGCGCGAAGATCTGATCACAT
LOC_Os01g11160
Os.33762.1.S1_at--222--6451Chr01:5980605..5980629 (25 bp)
GATCACATGCCTAATGATTTGGTAC
LOC_Os01g11160
Os.33762.1.S1_at--284--10211Chr01:5980566..5980590 (25 bp)
TATTCAAAACTGTAGCGTGCAACTG
LOC_Os01g11160
Os.33762.1.S1_at--415--7351Chr01:5980550..5980574 (25 bp)
GTGCAACTGCAAATATCATTATCTA
LOC_Os01g11160
Os.33762.1.S1_at--717--10751Chr01:5980525..5980549 (25 bp)
TTGAACAGTATCTCACCAAAGTGGG
LOC_Os01g11160
Os.33762.1.S1_at--456--7951Chr01:5980481..5980505 (25 bp)
GGATAGGGATATCCCCTCCGTCTGT
LOC_Os01g11160
Os.33762.1.S1_at--395--3811Chr01:5980466..5980490 (25 bp)
CTCCGTCTGTCGTGTCATGTAAATA
LOC_Os01g11160
Target Sequence 
GCACGCTCGGCATCCAGCTTCTGGTNCCGGCGNGCGCGCGCNGCCCAAGGTNNNGTGGGGCGTGNCCGCTCGTGCCGTGG
CTGCCGTCGCTGTCCATCGCCACCAACCTCTTCCTCATGGGCTCGCTCGGCGCGCAGGCGTTCATCCGCTTCGGCGTCTG
CACCGCCATCATGCTGCTCTACTACGTGCTCGTCGGGCTGCACGCCACCTACGACGTCGCGCACGGCGCGTGCTCCGGCG
ACGACGTCGACGAGGAGGTCTACGCTGATGCCGCCCACGTGGACGATGCGAAGGCGGCGGCCGCGGTCGCTGCCAACGCA
GACGTGGAGAGGGCGGGCGCGAAGATCTGATCACATGCCTAATGATTTGGTACATTGATGCGAAGAATATTCAAAACTGT
AGCGTGCAACTGCAAATATCATTATCTATTGAACAGTATCTCACCAAAGTGGGAAATGGATTCTCTTTGGAGGGATAGGG
ATATCCCCTCCGTCTGTCGTGTCATGTAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis