Browse Element(s) Details


Os.33816.1.S1_at

Description gb:AK073926.1
DB_XREF= gi:32983949
TID=Os.33816.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33816 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0022F10.21 (P0022F10.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073E17, full insert sequence.
FL= gb:AK073926.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5261010/11plant integral membrane protein TIGR01569 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52560Os.35398.2.S1_x_at11/111+30540714..30549822ABC transporter family protein, putative, expressed
LOC_Os01g52570OsAffx.2316.1.S1_at11/111+30552686..30553354Lachrymatory-factor synthase precursor, putative, expressed
LOC_Os01g52579OsAffx.23765.1.S1_at2/111+30554956..30555830NA
LOC_Os01g52590OsAffx.23765.1.S1_at7/111+30556825..30557265hypothetical protein
LOC_Os01g52600NANA1+30564807..30567609hypothetical protein
LOC_Os01g52610Os.33816.1.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610Os.33816.2.S1_at10/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.12648.1.S1_at2/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52610OsAffx.18402.1.S1_at1/111+30568801..30577950plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g52630Os.16429.1.S1_at9/111+30578268..30581614Regulator of chromosome condensation family protein, expressed
LOC_Os01g52640Os.27322.2.S1_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.3.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52640Os.27322.1.S1_x_at11/111+30584599..30590251WD-40 repeat family protein, putative, expressed
LOC_Os01g52650Os.13994.1.S1_at11/111+30590230..30591228Pollen proteins Ole e I family protein, expressed
LOC_Os01g52660Os.5920.1.S1_at9/111+30599760..30600925Pollen proteins Ole e I family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33816.1.S1_at--966--7751NONE
GGTGATCAGATCTTCGCATATGCAA
NONE
Os.33816.1.S1_at--501--1991Chr01:30577652..30577676 (25 bp)
ACTGCCACGTTTCTGCGACTTGTCA
LOC_Os01g52610
Os.33816.1.S1_at--915--531Chr01:30577686..30577710 (25 bp)
ATCGCGTGTGCCTTTCTCAGTTGCA
LOC_Os01g52610
Os.33816.1.S1_at--13--1251Chr01:30577704..30577728 (25 bp)
AGTTGCATCTTCCTTGCGGCATCTG
LOC_Os01g52610
Os.33816.1.S1_at--422--9491Chr01:30577725..30577749 (25 bp)
TCTGCTGTGATCGATGTCATCTGGC
LOC_Os01g52610
Os.33816.1.S1_at--149--7131Chr01:30577740..30577764 (25 bp)
GTCATCTGGCTGTCAAATATGTGAG
LOC_Os01g52610
Os.33816.1.S1_at--628--8891Chr01:30577769..30577793 (25 bp)
TGAGAAGGTCGTAATTCCTTTTCCT
LOC_Os01g52610
Os.33816.1.S1_at--60--2651Chr01:30577800..30577824 (25 bp)
AACCATCAGGGTGCAGGGTGCTGTA
LOC_Os01g52610
Os.33816.1.S1_at--950--3871Chr01:30577820..30577844 (25 bp)
CTGTATGTACTTGCACCGTGGGTAT
LOC_Os01g52610
Os.33816.1.S1_at--809--6951Chr01:30577884..30577908 (25 bp)
GTAGAACATATGACGTTTGCTGCTT
LOC_Os01g52610
Os.33816.1.S1_at--763--9051Chr01:30577904..30577928 (25 bp)
TGCTTGTACAAAGGAATCCCCTCTC
LOC_Os01g52610
Target Sequence 
GGTGATCAGATCTTCGCATATGCAATGATGAGTGCTGGATCAGCAGCGGCGGCAGTCGCGAATCTGAACCGCACCGGCAT
CCGGCACACGGCGCTCCCCAACTTCTGCAAGCCACTGCCACGTTTCTGCGACTTGTCAGCGGCCTCCATCGCGTGTGCCT
TTCTCAGTTGCATCTTCCTTGCGGCATCTGCTGTGATCGATGTCATCTGGCTGTCAAATATGTGAGAGTTTGAGAAGGTC
GTAATTCCTTTTCCTTTGTGGAACCATCAGGGTGCAGGGTGCTGTATGTACTTGCACCGTGGGTATGTGAGATAATCAAC
TGAACCCAAAATGTGTTAGAACTTAGTAGAACATATGACGTTTGCTGCTTGTACAAAGGAATCCCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33816.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis