Browse Element(s) Details


Os.33971.1.S1_at

Description gb:AK073330.1
DB_XREF= gi:32983353
TID=Os.33971.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024A12, full insert sequence.
FL= gb:AK073330.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1218011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12150OsAffx.32171.1.S1_x_at11/111+6613534..6615625hypothetical protein
LOC_Os01g12150OsAffx.32171.2.S1_at7/111+6613534..6615625hypothetical protein
LOC_Os01g12150Os.49487.1.S1_at1/111+6613534..6615625hypothetical protein
LOC_Os01g12160Os.34283.1.S1_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12160Os.34283.2.S1_x_at11/111+6622842..6627264GH3 auxin-responsive promoter family protein, expressed
LOC_Os01g12170OsAffx.380.1.S1_at4/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12170OsAffx.29576.2.S1_x_at1/111+6630520..6634401retrotransposon protein, putative, unclassified
LOC_Os01g12180Os.33971.1.S1_at11/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.1.S1_at9/111+6639467..6643094expressed protein
LOC_Os01g12180OsAffx.9909.2.S1_x_at4/111+6639467..6643094expressed protein
LOC_Os01g12190Os.47598.1.S1_at11/111+6646595..6647321expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_x_at9/111+6649926..6652092expressed protein
LOC_Os01g12200Os.3507.1.S1_at8/111+6649926..6652092expressed protein
LOC_Os01g12200OsAffx.9908.1.S1_at4/111+6649926..6652092expressed protein
LOC_Os01g12210Os.26807.1.S1_at10/111+6655951..6659315Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g12220OsAffx.1987.1.S1_at11/111+6660335..6662262Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os01g12230Os.43450.1.S1_at11/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed
LOC_Os01g12230OsAffx.26711.2.S1_at1/111+6664426..6667249Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33971.1.S1_at--784--1611Chr01:6640670..6640694 (25 bp)
AGCTGTTTGTGCTCTCTATCGAAAG
LOC_Os01g12180
Os.33971.1.S1_at--108--7051Chr01:6640624..6640648 (25 bp)
GTAAAGGCCACCATTTTGCATAACA
LOC_Os01g12180
Os.33971.1.S1_at--258--7931Chr01:6640594..6640618 (25 bp)
GGATTTAACCAGATTGATGCCGCAA
LOC_Os01g12180
Os.33971.1.S1_at--744--10671Chr01:6639935..6639959 (25 bp)
TTCCATAGCGGAGTTTCTTCTTGAT
LOC_Os01g12180
Os.33971.1.S1_at--564--811Chr01:6639912..6639936 (25 bp)
ATGGTGATACTTTTGGCCCGCTTAA
LOC_Os01g12180
Os.33971.1.S1_at--655--3431Chr01:6639865..6639889 (25 bp)
CAGTACGATCGTTATGCTCTTGAAT
LOC_Os01g12180
Os.33971.1.S1_at--526--9331Chr01:6639828..6639852 (25 bp)
TCGCCGCACGTTACTCAAAACAGTT
LOC_Os01g12180
Os.33971.1.S1_at--868--431Chr01:6639690..6639714 (25 bp)
ATCTTACTCTTGTAGTCTCGTGTAC
LOC_Os01g12180
Os.33971.1.S1_at--972--51Chr01:6639615..6639639 (25 bp)
ATTGCAGCCACCCTATGTTTATATC
LOC_Os01g12180
Os.33971.1.S1_at--1112--2831Chr01:6639572..6639596 (25 bp)
AAGTCAAGAGTGTTTCCGTCAGAAG
LOC_Os01g12180
Os.33971.1.S1_at--556--10791Chr01:6639523..6639547 (25 bp)
TTGTTGATACTTGATACCTTGGCTA
LOC_Os01g12180
Target Sequence 
AGCTGTTTGTGCTCTCTATCGAAAGCAAACTAAGGATGAACAGGAAGTAAAGGCCACCATTTTGCATAACAAGCAAGGAT
TTAACCAGATTGATGCCGCAAGGGGATCTTCCATAGCGGAGTTTCTTCTTGATGGTGATACTTTTGGCCCGCTTAAGAAG
ACTGTCCATGATTTGGAGCAGTACGATCGTTATGCTCTTGAATTCTGTCACAAGCTCGCCGCACGTTACTCAAAACAGTT
GTTTTCAATATATCAGAACAAGGAGGACCCCTACTTCCATCCATGACTCTGGTAATGTTAGTTCATTTGGTTGAACTTTT
GTTGGTCCTTGTAATATTCTTACTACTGTACCTATCTTACTCTTGTAGTCTCGTGTACATATATATTTCTTCTGGAGAAG
TTAGTGCTTGCTAAGATTAAGTTTGCAGATTGCAGCCACCCTATGTTTATATCACTTAGAGGTATTTTGTTAAGTCAAGA
GTGTTTCCGTCAGAAGAGAAAGTGTCTGATGAGGTTTGCATTGTTGATACTTGATACCTTGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis