Browse Element(s) Details


Os.34012.1.S1_at

Description gb:AK073171.1
DB_XREF= gi:32983194
TID=Os.34012.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34012 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal RNA apurinic site specific lyase (OSJNBb0091I19.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022I08, full insert sequence.
FL= gb:AK073171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1851011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18480OsAffx.16324.2.S1_s_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_x_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18489OsAffx.22832.2.S1_at1/117+10939766..10941659NA
LOC_Os07g18489OsAffx.22832.2.S1_x_at1/117+10939766..10941659NA
LOC_Os07g18500Os.46012.2.S1_x_at10/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.46012.3.S1_x_at6/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.27088.1.A1_x_at5/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18510Os.34012.1.S1_at11/117+10952398..10954190F-box domain containing protein, expressed
LOC_Os07g18520Os.26886.2.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520Os.26886.6.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520OsAffx.16467.1.S1_at3/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.1.S1_x_at8/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18530Os.26886.3.S1_x_at6/117+10963093..10966437transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18540OsAffx.16325.1.S1_at10/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_at3/117+10968766..10971196hypothetical protein
LOC_Os07g18540Os.39431.1.S1_x_at2/117+10968766..10971196hypothetical protein
LOC_Os07g18550OsAffx.8792.1.S1_at11/117+10973694..10974107hypothetical protein
LOC_Os07g18560Os.30976.1.S1_at11/117+10977428..10979183F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34012.1.S1_at--628--911Chr07:10952899..10953015 (25 bp)
AGGCTGTATATTGCTTCTCAACCGT
LOC_Os07g18510
Os.34012.1.S1_at--700--7851Chr07:10952850..10952874 (25 bp)
GGTATGACCCGCTAAATCCAATAGA
LOC_Os07g18510
Os.34012.1.S1_at--575--5271Chr07:10952827..10952851 (25 bp)
GAATGCATTCAGTTCCATCTCAAAA
LOC_Os07g18510
Os.34012.1.S1_at--624--10451Chr07:10952710..10952734 (25 bp)
TTAGCTGGCCTTAACAATTGCAATC
LOC_Os07g18510
Os.34012.1.S1_at--737--6611Chr07:10952678..10952702 (25 bp)
GTTGGCCAATCAACACAGGCGGCTT
LOC_Os07g18510
Os.34012.1.S1_at--1056--3231Chr07:10952579..10952603 (25 bp)
CAAGCACACCCATGATTTGTCAATA
LOC_Os07g18510
Os.34012.1.S1_at--885--471Chr07:10952555..10952579 (25 bp)
ATCTGATCCCTTTGATAGGTCTTTA
LOC_Os07g18510
Os.34012.1.S1_at--240--10331Chr07:10952534..10952558 (25 bp)
TTTATGACCATGCTGCTCTCGGATA
LOC_Os07g18510
Os.34012.1.S1_at--1110--4751Chr07:10952523..10952547 (25 bp)
GCTGCTCTCGGATATGATACACATG
LOC_Os07g18510
Os.34012.1.S1_at--324--8791Chr07:10952477..10952501 (25 bp)
TGTTATATTTGTACCTTCTCTTGTT
LOC_Os07g18510
Os.34012.1.S1_at--432--10071Chr07:10952445..10952469 (25 bp)
TAGTGTCGTACTATGTCAGCAAGTT
LOC_Os07g18510
Target Sequence 
AGGCTGTATATTGCTTCTCAACCGTTTAAGGTTATTAAAAATACGCGGAGGTATGACCCGCTAAATCCAATAGAATGCAT
TCAGTTCCATCTCAAAAAAGTGGTGATAAGAAATTATGGAGGAAGGAGGTCAGATGTCGACTTTGCCAAGTTCTTTGTTC
TGAATGCAAAAGCGCTAAGAGAAATGGAGTTAGCTGGCCTTAACAATTGCAATCAGAAATGGTTGGCCAATCAACACAGG
CGGCTTCAATTAGAAAAGAAAGCATCTCAAAATGCTCAATTTACATTTAAAACTACCCATACGAGTGATTTCAGTATGAA
CAAGCACACCCATGATTTGTCAATATCTGATCCCTTTGATAGGTCTTTATGACCATGCTGCTCTCGGATATGATACACAT
GCAGTCTTGTATTATGTTCAAATGTTATATTTGTACCTTCTCTTGTTTGGATTTTAGTGTCGTACTATGTCAGCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis