Browse Element(s) Details


Os.34131.1.S1_s_at

Description gb:AK072732.1
DB_XREF= gi:32982755
TID=Os.34131.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.34131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative transposase (P0436E04.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138L22, full insert sequence.
FL= gb:AK072732.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5284010/11hAT family dimerisation domain containing protein
LOC_Os02g5583010/11hAT family dimerisation domain containing protein
LOC_Os01g0156010/11hAT family dimerisation domain containing protein
LOC_Os12g0246010/11hAT family dimerisation domain containing protein
LOC_Os07g172909/11hAT family dimerisation domain containing protein
LOC_Os07g286509/11hAT family dimerisation domain containing protein
LOC_Os03g138808/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed
LOC_Os01g52890Os.37867.1.S1_at11/111+30739675..30740422expressed protein
LOC_Os01g52900Os.28903.1.S1_at11/111+30740541..30742654aminotransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34131.1.S1_s_at--824--1679Chr07:16770832..16770856 (25 bp)
AGCCATGGTGGTGGTACCAGTTCAT
LOC_Os07g28650
Os.34131.1.S1_s_at--228--10058Chr07:16770876..16770900 (25 bp)
TAGATCGCATGGTCCTGCCGAAGAG
LOC_Os07g28650
Os.34131.1.S1_s_at--449--7258Chr07:16770887..16770911 (25 bp)
GTCCTGCCGAAGAGTTGTCCAACTA
LOC_Os07g28650
Os.34131.1.S1_s_at--283--10197Chr03:35429040..35429064 (25 bp)
TATTTGGATAGCGATGCCATCAGGC
NONE
Os.34131.1.S1_s_at--536--4438Chr07:16770925..16770949 (25 bp)
GCCATCAGGCATGAAACGTCAGACT
LOC_Os07g28650
Os.34131.1.S1_s_at--373--9659Chr07:16770943..16770967 (25 bp)
TCAGACTTCAACGTACTCGGGTGGT
LOC_Os07g28650
Os.34131.1.S1_s_at--731--6279Chr07:16770981..16771005 (25 bp)
GATGTCATATCCTGTGCTATCAAAA
LOC_Os07g28650
Os.34131.1.S1_s_at--361--6899Chr07:16771033..16771057 (25 bp)
GTATCTTCGGTATCCTCCGAATCAG
LOC_Os07g28650
Os.34131.1.S1_s_at--198--3239Chr07:16771097..16771121 (25 bp)
CAAGTCTGAGCAGCGATCATGTGGA
LOC_Os07g28650
Os.34131.1.S1_s_at--43--2777Chr07:16771139..16771163 (25 bp)
AAGACTGGGAACTTGCTGCAGAACA
LOC_Os07g28650
Os.34131.1.S1_s_at--974--10755Chr07:16771264..16771288 (25 bp)
TTGACCTGTTGGCTGTACTCTTTTC
NONE
Target Sequence 
AGCCATGGTGGTGGTACCAGTTCATCAGCAGCAAGTGGGGACGCTAGATCGCATGGTCCTGCCGAAGAGTTGTCCAACTA
TTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGNAATGATCATAAGATGTCATATC
CTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGC
GGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACT
TGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAANTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAAC
AATTAGGGTAGCTAGTTTATATTTTTTAAGTATTGACCTGTTGGCTGTACTCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34131.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis