Browse Element(s) Details


Os.34170.1.S1_at

Description gb:AK072600.1
DB_XREF= gi:32982623
TID=Os.34170.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative selenium-binding protein (OSJNBb0021A09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023130A18, full insert sequence.
FL= gb:AK072600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5361011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53560OsAffx.11589.1.S1_x_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.2.S1_at10/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53560OsAffx.11589.1.S1_at5/111+31080145..31087800phosphoesterase, putative, expressed
LOC_Os01g53570Os.32118.1.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.1.S1_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53570Os.32118.2.S1_x_at11/111+31090937..31093436Uncharacterized protein family UPF0005 containing protein, expressed
LOC_Os01g53580NANA1+31095323..310959493'-5' exonuclease family protein
LOC_Os01g53590OsAffx.21642.1.S1_s_at11/111+31097247..310998513'-5' exonuclease family protein
LOC_Os01g53600Os.53562.1.S1_s_at11/111+31101964..31106121Protein farnesyltransferase beta subunit, putative, expressed
LOC_Os01g53610Os.34170.1.S1_at11/111+31106241..31109574pentatricopeptide, putative, expressed
LOC_Os01g53620OsAffx.23776.1.S1_at11/111+31112951..31114867expressed protein
LOC_Os01g53620Os.9011.1.S1_at10/111+31112951..31114867expressed protein
LOC_Os01g53630Os.42170.1.S1_x_at10/111+31115825..31123367Ulp1 protease family, C-terminal catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34170.1.S1_at--362--1271Chr01:31108995..31109019 (25 bp)
AGATACTCGATTTGTGCTTCATGAT
LOC_Os01g53610
Os.34170.1.S1_at--247--7151Chr01:31109084..31109108 (25 bp)
GTCTTATAACTAGTGCTGCTCGGTC
LOC_Os01g53610
Os.34170.1.S1_at--429--4791Chr01:31109101..31109125 (25 bp)
GCTCGGTCACCTATTCGGGTTATAA
LOC_Os01g53610
Os.34170.1.S1_at--1117--1991Chr01:31109178..31109202 (25 bp)
ACTCGTTGGTCGTTTGATCATTGCA
LOC_Os01g53610
Os.34170.1.S1_at--1067--8331Chr01:31109340..31109364 (25 bp)
GGCTGTTGCCTAACACTTAGCTAGC
LOC_Os01g53610
Os.34170.1.S1_at--658--1571Chr01:31109358..31109382 (25 bp)
AGCTAGCCACTAGTTTCATGTCAGG
LOC_Os01g53610
Os.34170.1.S1_at--896--5111Chr01:31109382..31109406 (25 bp)
GCACATGTATGCTTTTTCTTTGAAT
LOC_Os01g53610
Os.34170.1.S1_at--1075--3011Chr01:31109404..31109428 (25 bp)
AATGCTCATTCTCTTTTGCTTTTCT
LOC_Os01g53610
Os.34170.1.S1_at--680--5511Chr01:31109469..31109493 (25 bp)
GAACAATCTTACATGCTGCCTTTCA
LOC_Os01g53610
Os.34170.1.S1_at--930--10531Chr01:31109490..31109514 (25 bp)
TTCAGTGGCACTTCTTCTCTAGGAG
LOC_Os01g53610
Os.34170.1.S1_at--786--991Chr01:31109510..31109534 (25 bp)
AGGAGGCCATCTAAATTCGCTGTAT
LOC_Os01g53610
Target Sequence 
AGATACTCGATTTGTGCTTCATGATGTTGATCAAGAAACTAAAGAGGATGCTTTACTAGCTCATAGTGAGAGGCTAGCTG
TCAGTTATGGTCTTATAACTAGTGCTGCTCGGTCACCTATTCGGGTTATAAAGAATCTACGCTCATGTGGAGATTGTCAT
ACAGCTTTGAAGATAATCTCTAAACTCGTTGGTCGTTTGATCATTGCAAGGGATGCAAAGAGATTTCACCATTTTGAGAA
TGGTGTATGCTCTTGCAAAGACTATTGGTAAACACAATATAGCAAACCTACATTGTTCAATTTTGAGGTACAAAACCACA
ATAGGTTGTGTAAATCCAGAAGGTAGGCTGTTGCCTAACACTTAGCTAGCCACTAGTTTCATGTCAGGCACATGTATGCT
TTTTCTTTGAATGCTCATTCTCTTTTGCTTTTCTTTTGGTGATTTATTATTCAGGAAATCAAGCGTTTGAACTTGAACAA
TCTTACATGCTGCCTTTCAGTGGCACTTCTTCTCTAGGAGGCCATCTAAATTCGCTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis