Browse Element(s) Details


Os.3419.1.S1_a_at

Description gb:AY333185.1
DB_XREF= gi:33465888
TID=Os.3419.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3419 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) drought-resistant protein mRNA, complete cds.
PROD=drought-resistant protein
FL= gb:AY333185.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5070011/11Dehydrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50650Os.28943.1.S1_x_at2/111+29418119..29421610retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.37083.2.S1_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.47130.4.A1_x_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50670OsAffx.21478.1.S1_at11/111+29427498..29428169transposon protein, putative, unclassified
LOC_Os01g50680OsAffx.23738.1.S1_x_at11/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50680OsAffx.17117.1.S1_x_at1/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50690Os.50469.1.S1_x_at11/111+29436783..29446209expressed protein
LOC_Os01g50690Os.39477.1.S1_x_at9/111+29436783..29446209expressed protein
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3419.1.S1_a_at--97--9851Chr01:29451072..29451096 (25 bp)
TAAAGGAGAAGCTTCCCGGCAGCCA
LOC_Os01g50700
Os.3419.1.S1_a_at--784--1511Chr01:29451108..29451132 (25 bp)
AGCAGAAGCAAGCTGGCCACACGGC
LOC_Os01g50700
Os.3419.1.S1_a_at--206--4571Chr01:29451255..29451279 (25 bp)
GCGCGCACGCACTTTCATCGGTTGA
LOC_Os01g50700
Os.3419.1.S1_a_at--1101--6911Chr01:29451303..29451327 (25 bp)
GTATGTATAATACCAGTCGTGTTTC
LOC_Os01g50700
Os.3419.1.S1_a_at--35--2851Chr01:29451311..29451335 (25 bp)
AATACCAGTCGTGTTTCAGTTCGTT
LOC_Os01g50700
Os.3419.1.S1_a_at--1098--9611Chr01:29451326..29451350 (25 bp)
TCAGTTCGTTAATTTTACGGTCGAT
LOC_Os01g50700
Os.3419.1.S1_a_at--397--9931Chr01:29451341..29451365 (25 bp)
TACGGTCGATGTGTGGTCTCGGTAA
LOC_Os01g50700
Os.3419.1.S1_a_at--364--8651Chr01:29451352..29451376 (25 bp)
TGTGGTCTCGGTAAAACTAGGTGGT
LOC_Os01g50700
Os.3419.1.S1_a_at--407--2531Chr01:29451366..29451390 (25 bp)
AACTAGGTGGTGTACAGTGCGTCTA
LOC_Os01g50700
Os.3419.1.S1_a_at--704--9871Chr01:29451378..29451402 (25 bp)
TACAGTGCGTCTATGCATGTACGGT
LOC_Os01g50700
Os.3419.1.S1_a_at--158--4991Chr01:29451392..29451416 (25 bp)
GCATGTACGGTGTATCCAATAATCC
LOC_Os01g50700
Target Sequence 
TAAAGGAGAAGCTTCCCGGCAGCCACAAGCAGGAGGAGCAGAAGCAAGCTGGCCACACGGCTCCGGCGGCCGGGACGGGN
NNNNNGACGGGGACGGGGACGCATGCAGCGGGGAAGCACGAGAAGAAGGGCATCGTGGAGAAGATCAAGGAGAAGCTCCC
CGGCCACGGCCACCACTGAGCGAGAGCTCGCGCGCACGCACTTTCATCGGTTGACNTTCGTGCAACTGTCCATGCATGTA
TGTATAATACCAGTCGTGTTTCAGTTCGTTAATTTTACGGTCGATGTGTGGTCTCGGTAAAACTAGGTGGTGTACAGTGC
GTCTATGCATGTACGGTGTATCCAATAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3419.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis