Browse Element(s) Details


Os.3422.1.S1_at

Description gb:AK063598.1
DB_XREF= gi:32973616
TID=Os.3422.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3422 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-B07, full insert sequence.
FL= gb:AK063598.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6197011/11Actin-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61920Os.14084.1.S1_at11/113+35039306..35042530electron transfer flavoprotein, alpha subunit containing protein, expressed
LOC_Os03g61930Os.27432.1.S1_at11/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61930OsAffx.32203.1.S1_x_at1/113+35044082..35051429acyl-CoA binding family protein, putative, expressed
LOC_Os03g61940OsAffx.25792.1.S1_at11/113+35052695..35053234Small heat shock protein, chloroplast precursor, putative
LOC_Os03g61950Os.23196.1.S1_x_at11/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.23196.2.S1_at10/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61950Os.50667.1.S1_at1/113+35054269..35060730Kelch motif family protein, expressed
LOC_Os03g61960Os.10612.1.S1_at11/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61960OsAffx.11477.1.S1_x_at1/113+35061376..35063290Ferredoxin-3, chloroplast precursor, putative, expressed
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009733biological_processresponse to auxin stimulus
GO:0009845biological_processseed germination
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0048364biological_processroot development
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3422.1.S1_at--285--7811Chr03:35065436..35065460 (25 bp)
GGTCGTGGCACCTCCTGAGAGAAAA
LOC_Os03g61970
Os.3422.1.S1_at--1033--7911Chr03:35065401..35065425 (25 bp)
GGATTGGAGGTTCTATCCTTGCCTC
LOC_Os03g61970
Os.3422.1.S1_at--827--6071Chr03:35064930..35064954 (25 bp)
GAGTATGATGAATCCGGCCCTTCAA
LOC_Os03g61970
Os.3422.1.S1_at--296--5591Chr03:35064895..35064919 (25 bp)
GAAATGCTTCTAATCCGAGCCTTGC
LOC_Os03g61970
Os.3422.1.S1_at--919--9091Chr03:35064873..35064897 (25 bp)
TGCTCTGAGTATTTTCGGTGTGCCT
LOC_Os03g61970
Os.3422.1.S1_at--348--9191Chr03:35064853..35064877 (25 bp)
TGCCTCTCTGTTGTCTGTACTGTCA
LOC_Os03g61970
Os.3422.1.S1_at--109--7011Chr03:35064837..35064861 (25 bp)
GTACTGTCAGTCTTGTGAGCTTTGC
LOC_Os03g61970
Os.3422.1.S1_at--766--7191Chr03:35064798..35064822 (25 bp)
GTCGGTACTTTCGTCGTCAGTATAT
LOC_Os03g61970
Os.3422.1.S1_at--281--7851Chr03:35064715..35064739 (25 bp)
GGTAGATCCAAGCTCGTTTGTTTGA
LOC_Os03g61970
Os.3422.1.S1_at--687--10071Chr03:35064676..35064700 (25 bp)
TAGTGATTTCAGATGCCGTGTGTTC
LOC_Os03g61970
Os.3422.1.S1_at--875--1431Chr03:35064625..35064649 (25 bp)
AGAATTGTATCGGTTTGGCCGCCTC
LOC_Os03g61970
Target Sequence 
GGTCGTGGCACCTCCTGAGAGAAAATACAGTGTCTGGATTGGAGGTTCTATCCTTGCCTCCCTCAGCACATTCCAACAGA
TGTGGATATCTAAGGGAGAGTATGATGAATCCGGCCCTTCAATCGTCCACAGGAAATGCTTCTAATCCGAGCCTTGCTCT
GAGTATTTTCGGTGTGCCTCTCTGTTGTCTGTACTGTCAGTCTTGTGAGCTTTGCATGGTTGGGCGTGTGTCGGTACTTT
CGTCGTCAGTATATTTTCAAGTTTCTGAGAGCGTTTTTTTGCATATATGCTAGTACTACTGGATGAAGAAAAGGTAGATC
CAAGCTCGTTTGTTTGAGATATATCCTGCTTTAGTGATTTCAGATGCCGTGTGTTCTAGTGATATGTTGATATTAGTGAG
TGAGAATTGTATCGGTTTGGCCGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3422.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis