Browse Element(s) Details


Os.34512.1.S1_at

Description gb:AK071100.1
DB_XREF= gi:32981123
TID=Os.34512.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.34512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dehydrogenase (P0439E07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080N03, full insert sequence.
FL= gb:AK071100.1 gb:AK065837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5391011/11NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed
LOC_Os01g53890Os.6199.2.A1_at11/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53890Os.6199.3.S1_at5/111+31311370..31312428RNA methyltransferase, TrmH family, group 3 containing protein, expressed
LOC_Os01g53900Os.23236.1.S1_at11/111+31319259..31324028Elongation factor 2, putative, expressed
LOC_Os01g53910Os.34512.1.S1_at11/111+31324833..31326046NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g53920Os.11775.1.S2_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.2.S1_x_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53920Os.11775.1.S1_a_at11/111+31332874..31336695Leucine Rich Repeat family protein, expressed
LOC_Os01g53930Os.5547.1.S1_s_at11/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53930OsAffx.11594.1.S1_at8/111+31336016..31340802Hexokinase 1, putative, expressed
LOC_Os01g53940OsAffx.23783.1.S1_at10/111+31342756..31344464expressed protein
LOC_Os01g53950NANA1+31346241..31346545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.1.S1_x_at10/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.3.S1_x_at4/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.2.S1_x_at3/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g53960OsAffx.22947.5.S1_x_at2/111+31349454..31355817retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006098biological_processpentose-phosphate shunt
GO:0003824molecular_functioncatalytic activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34512.1.S1_at--1009--1651Chr01:31325350..31325374 (25 bp)
AGCGCGCGAAGCTGGGCAACCAGAT
LOC_Os01g53910
Os.34512.1.S1_at--1055--3891Chr01:31325339..31325363 (25 bp)
CTGGGCAACCAGATCGCGATCGCGT
LOC_Os01g53910
Os.34512.1.S1_at--938--531Chr01:31325321..31325345 (25 bp)
ATCGCGTCCACCATGGTCGGGCTGG
LOC_Os01g53910
Os.34512.1.S1_at--748--4371Chr01:31325215..31325239 (25 bp)
CCAAGTCGCTGGACCTGTACGGGAA
LOC_Os01g53910
Os.34512.1.S1_at--1015--9531Chr01:31325158..31325182 (25 bp)
TCTACGTGCGCCACTTCGTCAAGGA
LOC_Os01g53910
Os.34512.1.S1_at--1151--2911Chr01:31325138..31325162 (25 bp)
AAGGACCTCGGGATCTGCCTGTCGG
LOC_Os01g53910
Os.34512.1.S1_at--1057--2451Chr01:31324988..31325012 (25 bp)
AACAACACCTGCCTTGACAAGAAAC
LOC_Os01g53910
Os.34512.1.S1_at--1076--2731Chr01:31324970..31324994 (25 bp)
AAGAAACCGGAGTGAGCTCTGCTCA
LOC_Os01g53910
Os.34512.1.S1_at--485--4831Chr01:31324944..31324968 (25 bp)
GCTCAGCTCGGTTAGATGTGTTCGA
LOC_Os01g53910
Os.34512.1.S1_at--250--731Chr01:31324899..31324923 (25 bp)
ATGATTGCTTCGCTCTGTCTGTTTA
LOC_Os01g53910
Os.34512.1.S1_at--746--7171Chr01:31324883..31324907 (25 bp)
GTCTGTTTACAGTACAGTGGTTAAA
LOC_Os01g53910
Target Sequence 
AGCGCGCGAAGCTGGGCAACCAGATCGCGATCGCGTCCACCATGGTCGGGCTGGTGGAGGGCATGGTGTACGCGCACAAG
GCCGGGCTGGACGTGGCGAAGTGGCTGGAGGCCATCTCCACGGGCGCGGCGGGGTCCAAGTCGCTGGACCTGTACGGGAA
GCGGATGCTGGAGCGGGACATGGCGGCCGGGTTCTACGTGCGCCACTTCGTCAAGGACCTCGGGATCTGCCTGTCGGAGT
GCCAGGCCATGGGGCTGGCGCTGCCGGGGCTCGCGCTCGCGCACCAGCTCTACGTGTCGCTGCTCGCGCACGGCGAGGGC
GGCCTCGGCACGCAGGCGCTCATCCTCGCCATCGAGCGGCTCAACAACACCTGCCTTGACAAGAAACCGGAGTGAGCTCT
GCTCAGGCTCAGCTCGGTTAGATGTGTTCGATCGTGTAATGGAATGGTTGGATGATTGCTTCGCTCTGTCTGTTTACAGT
ACAGTGGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis