Browse Element(s) Details

Os.34575.1.S1_at

Description

gb:AK070888.1
DB_XREF= gi:32980911
TID=Os.34575.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023072F08, full insert sequence.
FL= gb:AK070888.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g09540	10/11	SAC domain protein 3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g09470	OsAffx.32056.1.S1_x_at	11/11	6	+	4818447..4823823	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09470	OsAffx.32056.1.S1_at	11/11	6	+	4818447..4823823	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480	OsAffx.10637.3.S1_s_at	10/11	6	+	4825817..4829152	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480	OsAffx.10637.1.S1_s_at	9/11	6	+	4825817..4829152	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09480	OsAffx.10637.4.S1_s_at	7/11	6	+	4825817..4829152	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g09490	OsAffx.27771.1.S1_x_at	11/11	6	+	4832721..4834950	AT hook motif-containing protein, putative
LOC_Os06g09490	OsAffx.27771.2.S1_s_at	11/11	6	+	4832721..4834950	AT hook motif-containing protein, putative
LOC_Os06g09500	NA	NA	6	+	4835639..4836148	transposon protein, putative, unclassified
LOC_Os06g09510	OsAffx.27530.1.S1_at	11/11	6	+	4836766..4837236	hypothetical protein
LOC_Os06g09520	OsAffx.27531.1.S1_at	11/11	6	+	4838629..4839129	hypothetical protein
LOC_Os06g09530	OsAffx.15333.1.S1_at	11/11	6	+	4841375..4842370	hypothetical protein
LOC_Os06g09540	Os.34575.1.S1_at	10/11	6	+	4843552..4853691	SAC domain protein 3, putative, expressed
LOC_Os06g09550	OsAffx.27538.1.S1_at	11/11	6	+	4861981..4862639	hypothetical protein
LOC_Os06g09560	Os.5817.1.S1_at	11/11	6	+	4866844..4869145	DnaJ domain containing protein, expressed
LOC_Os06g09570	Os.14676.2.S1_at	11/11	6	+	4869882..4873712	nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09570	Os.14676.1.S1_a_at	11/11	6	+	4869882..4873712	nucleolar GTP-binding protein 1, putative, expressed
LOC_Os06g09580	Os.35344.3.S1_x_at	9/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	OsAffx.22940.5.S1_at	7/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	Os.35344.18.S1_x_at	6/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR
LOC_Os06g09580	OsAffx.22940.5.S1_x_at	5/11	6	+	4874079..4876893	Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0007010	biological_process	cytoskeleton organization and biogenesis
GO:0009826	biological_process	unidimensional cell growth
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0005794	cellular_component	Golgi apparatus
GO:0004439	molecular_function	phosphoinositide 5-phosphatase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34575.1.S1_at--215--371	1	NONE	CTAGGAGAACGGAAGATCATGCTGC	NONE
Os.34575.1.S1_at--755--763	1	Chr06:4844049..4844073 (25 bp)	GGGAGACCTTTTGGTTCTAATATTG	LOC_Os06g09540
Os.34575.1.S1_at--134--583	1	Chr06:4844045..4844069 (25 bp)	GACCTTTTGGTTCTAATATTGCTAG	LOC_Os06g09540
Os.34575.1.S1_at--645--629	1	Chr06:4844021..4844045 (25 bp)	GATGATTTCATCACTCATAGCCAAG	LOC_Os06g09540
Os.34575.1.S1_at--309--19	1	Chr06:4844017..4844041 (25 bp)	ATTTCATCACTCATAGCCAAGCTAG	LOC_Os06g09540
Os.34575.1.S1_at--213--999	1	Chr06:4844004..4844028 (25 bp)	TAGCCAAGCTAGACGACGGCAGTCG	LOC_Os06g09540
Os.34575.1.S1_at--179--409	1	Chr06:4843991..4844015 (25 bp)	CGACGGCAGTCGTTATGATACCACT	LOC_Os06g09540
Os.34575.1.S1_at--431--115	1	Chr06:4843984..4844008 (25 bp)	AGTCGTTATGATACCACTGCAAGGA	LOC_Os06g09540
Os.34575.1.S1_at--344--31	1	Chr06:4843974..4843998 (25 bp)	ATACCACTGCAAGGAGGCGTAAGAT	LOC_Os06g09540
Os.34575.1.S1_at--226--561	1	Chr06:4843945..4843969 (25 bp)	GACAATATCGCCCTTACCATATTCT	LOC_Os06g09540
Os.34575.1.S1_at--629--431	1	Chr06:4843934..4843958 (25 bp)	CCTTACCATATTCTCCTTGTGACTC	LOC_Os06g09540

Target Sequence

CTAGGAGAACGGAAGATCATGCTGCAGAGATTCAGGCTCAGGGGTTATCGGAGCNTTTTGTTCAGTGGATTGATCAAGGG
GAGACCTTTTGGTTCTAATATTGCTAGATGATTTCATCACTCATAGCCAAGCTAGACGACGGCAGTCGTTATGATACCAC
TGCAAGGAGGCGTAAGATGTGAGACAATATCGCCCTTACCATATTCTCCTTGTGACTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis