Browse Element(s) Details


Os.34730.2.S1_x_at

Description gb:NM_189972.1
DB_XREF= gi:34907027
GEN=P0482D04.7
TID=Os.34730.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.34730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (P0482D04.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (P0482D04.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7012010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed
LOC_Os01g70140Os.18673.1.S1_at9/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70140OsAffx.2262.1.S1_x_at1/111+40922852..40925944Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g70150OsAffx.21844.1.S1_at5/111+40928143..40929262hypothetical protein
LOC_Os01g70160Os.9535.2.S1_x_at11/111+40934386..40937146Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34730.2.S1_x_at--629--4631Chr01:40911472..40911496 (25 bp)
GCGTTCTTGGCGTCGATGCCCGGAT
LOC_Os01g70120
Os.34730.2.S1_x_at--1148--3391Chr01:40911501..40911525 (25 bp)
CAGCTTCCGATACTACTGCCAGAAG
LOC_Os01g70120
Os.34730.2.S1_x_at--580--5791Chr01:40911583..40911604 (22 bp)
GACGAATGCGTCAGAATCACCGAGA
LOC_Os01g70120
Os.34730.2.S1_x_at--612--5811Chr01:40911701..40911725 (25 bp)
GACGCCTCAGCCGATCAAGAACAAT
LOC_Os01g70120
Os.34730.2.S1_x_at--346--1431Chr01:40911718..40911742 (25 bp)
AGAACAATGGCCATGGCTCCAGCGA
LOC_Os01g70120
Os.34730.2.S1_x_at--896--3491Chr01:40911729..40911753 (25 bp)
CATGGCTCCAGCGAGGTAGAGATCA
LOC_Os01g70120
Os.34730.2.S1_x_at--642--6951Chr01:40911744..40911768 (25 bp)
GTAGAGATCAATCCATGGCTTCGAT
LOC_Os01g70120
Os.34730.2.S1_x_at--79--551Chr01:40911780..40911804 (25 bp)
ATCCCTAACCGAATTCATCCTGAAT
LOC_Os01g70120
Os.34730.2.S1_x_at--524--9011Chr01:40911800..40911824 (25 bp)
TGAATTTAACATGCAGCTCTCCAAA
LOC_Os01g70120
Os.34730.2.S1_x_at--66--1591Chr01:40911814..40911838 (25 bp)
AGCTCTCCAAATCGGCACCGGAGGC
LOC_Os01g70120
Os.34730.2.S1_x_at--61--5951NONE
GAGCAGCTTGTTCAGCCGCCATAGC
NONE
Target Sequence 
GCGTTCTTGGCGTCGATGCCCGGATCCCCCAGCTTCCGATACTACTGCCAGAAGTCCGCCACCGTCGACGCCATCGTCGC
CGATGCCGACGGCGACGGCGACAGCGACGGCGACGAATGCGTCAGAATCACCGAGACGCCTCAGCCGATCAAGAACAATG
GCCATGGCTCCAGCGAGGTAGAGATCAATCCATGGCTTCGATCTTCCTCCCGAATCCCTAACCGAATTCATCCTGAATTT
AACATGCAGCTCTCCAAATCGGCACCGGAGGCGAGCAGCTTGTTCAGCCGCCATAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34730.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis