Browse Element(s) Details


Os.34773.1.S1_at

Description gb:AK070200.1
DB_XREF= gi:32980224
TID=Os.34773.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042B11, full insert sequence.
FL= gb:AK070200.1 gb:AK060324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3052011/11Ras-related protein RHN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g30480OsAffx.6822.1.S1_at11/1110+15528789..15529881hypothetical protein
LOC_Os10g30480OsAffx.6822.1.S1_x_at10/1110+15528789..15529881hypothetical protein
LOC_Os10g30490NANA10+15530487..15530942hypothetical protein
LOC_Os10g30500OsAffx.18465.1.S1_at11/1110+15531955..15532221hypothetical protein
LOC_Os10g30510OsAffx.20303.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510Os.50704.1.S1_at11/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30510OsAffx.10048.1.S1_x_at1/1110+15534578..15538939retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g30520Os.34773.1.S1_at11/1110+15539899..15544169Ras-related protein RHN1, putative, expressed
LOC_Os10g30530Os.46882.1.S1_at11/1110+15544922..15547170lectin protein kinase, putative, expressed
LOC_Os10g30540Os.46490.1.S1_at11/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30540OsAffx.15098.1.S1_at1/1110+15548312..15550657lectin protein kinase, putative, expressed
LOC_Os10g30550Os.46675.1.S1_at10/1110+15555578..15564215methyltransferase family protein, expressed
LOC_Os10g30560NANA10+15564672..15566669UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0045022biological_processearly endosome to late endosome transport
GO:0005769cellular_componentearly endosome
GO:0010009cellular_componentexternal side of endosome membrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34773.1.S1_at--130--891Chr10:15543824..15543848 (25 bp)
AGGCCAACACCATCCTGAATTCCTG
LOC_Os10g30520
Os.34773.1.S1_at--178--9011Chr10:15543839..15543863 (25 bp)
TGAATTCCTGATTGGTAACTGACCC
LOC_Os10g30520
Os.34773.1.S1_at--75--3951Chr10:15543852..15543876 (25 bp)
GGTAACTGACCCAGGAAACAGGCTG
LOC_Os10g30520
Os.34773.1.S1_at--161--8351Chr10:15543872..15543896 (25 bp)
GGCTGGCAACTGTGTATTGTACAAC
LOC_Os10g30520
Os.34773.1.S1_at--962--2691Chr10:15543905..15543929 (25 bp)
AAGCTCTGTATGCACATTGTTTGGA
LOC_Os10g30520
Os.34773.1.S1_at--367--2351Chr10:15543949..15543973 (25 bp)
AAAGCAACTACTTTGCTCCTTGCTG
LOC_Os10g30520
Os.34773.1.S1_at--768--9071Chr10:15543972..15543996 (25 bp)
TGCTTCTGTTTCCAGCTTGGTCAAG
LOC_Os10g30520
Os.34773.1.S1_at--155--3471Chr10:15544003..15544027 (25 bp)
CAGTGTTTTGCTCAGCACAAGCTGA
LOC_Os10g30520
Os.34773.1.S1_at--929--10411Chr10:15544067..15544091 (25 bp)
TTATGCTGCAGGAATTTAACCGTTT
LOC_Os10g30520
Os.34773.1.S1_at--536--5512Chr10:15544097..15544121 (25 bp)
GAAAATCTTGTGAAATTCCTGCGTT
LOC_Os10g30520
Os.34773.1.S1_at--505--10671Chr10:15544112..15544136 (25 bp)
TTCCTGCGTTCAAAACAGAGCCTTT
LOC_Os10g30520
Target Sequence 
AGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTA
AAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTC
CAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTT
GCATTATGCTGCAGGAATTTAACCGTTTCCTGNGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis