Browse Element(s) Details


Os.34829.1.S1_at

Description gb:AK069983.1
DB_XREF= gi:32980007
TID=Os.34829.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34829 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037H09, full insert sequence.
FL= gb:AK069983.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1327011/11Protein kinase PVPK-1, putative, expressed
LOC_Os12g393201/11early-responsive to dehydration protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13229OsAffx.31820.1.S1_x_at11/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229OsAffx.31820.1.S1_at10/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13229Os.4195.1.S1_at3/111+7366474..7377853Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13250Os.11084.2.S1_at11/111+7382697..7384966expressed protein
LOC_Os01g13250Os.11084.2.S1_x_at7/111+7382697..7384966expressed protein
LOC_Os01g13260Os.4195.1.S1_at11/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_x_at7/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13260OsAffx.31820.1.S1_at2/111+7386175..7390510Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g13270Os.34829.1.S1_at11/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13270OsAffx.2666.1.S1_x_at1/111+7397311..7401114Protein kinase PVPK-1, putative, expressed
LOC_Os01g13280Os.3634.1.S1_a_at11/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13280Os.48021.1.S1_x_at3/111+7401700..7406442Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34829.1.S1_at--129--2931Chr01:7400637..7400661 (25 bp)
AAGGACCCCGGCAAGAGGATCGCGT
LOC_Os01g13270
Os.34829.1.S1_at--763--2051Chr01:7400764..7400788 (25 bp)
ACTTCAGCCAGTTCGGCGTGAGGGA
LOC_Os01g13270
Os.34829.1.S1_at--1129--9271Chr01:7400844..7400868 (25 bp)
TCCGGCGACTTCGAGTATTTCTAGC
LOC_Os01g13270
Os.34829.1.S1_at--1102--1191Chr01:7400857..7400881 (25 bp)
AGTATTTCTAGCTCCCATCTGTGAG
LOC_Os01g13270
Os.34829.1.S1_at--351--4171Chr01:7400870..7400894 (25 bp)
CCCATCTGTGAGTATTTCTAGGAAC
LOC_Os01g13270
Os.34829.1.S1_at--204--7151Chr01:7400931..7400955 (25 bp)
GTCTATTGATTCTTTGTTACTGTTG
LOC_Os01g13270
Os.34829.1.S1_at--816--6772Chr12:24163787..24163901 (24 bp)
GTTACTGTTGTATTGCTCCTTAATT
LOC_Os12g39320
Os.34829.1.S1_at--96--4711Chr01:7400960..7400984 (25 bp)
GCTCCTTAATTACAGTACACCCATA
LOC_Os01g13270
Os.34829.1.S1_at--565--3551Chr01:7400981..7401005 (25 bp)
CATACATGATTCTTGGGATCCTGGT
LOC_Os01g13270
Os.34829.1.S1_at--1091--7651Chr01:7400995..7401019 (25 bp)
GGGATCCTGGTATACACATGTACAA
LOC_Os01g13270
Os.34829.1.S1_at--50--5051Chr01:7401089..7401112 (24 bp)
GCAGATGTTCATTTCTTTAGCTGAC
LOC_Os01g13270
Target Sequence 
AAGGACCCCGGCAAGAGGATCGCGTCGAGGAGGGGCGCCACCGAGATCAAGCAGCATCCCTTCTTCGAGGGCGTCAACTG
GGCGCTCGTGCGCAGCGCCCACCCGCCATCGGTGCCTGACCCCGTCGACTTCAGCCAGTTCGGCGTGAGGGAGAAGCCGG
CGGCGGCGCCGACGAAGGTGGCCAAGCCGGCGGCGAGCGATTCCTCCTCCGGCGACTTCGAGTATTTCTAGCTCCCATCT
GTGAGTATTTCTAGGAACTGAAAAATACATTTAGATACAGAAAAAAAAATATACAGTCTATTGATTCTTTGTTACTGTTG
TATTGCTCCTTAATTACAGTACACCCATACATGATTCTTGGGATCCTGGTATACACATGTACAAACAATGTGATAGCTTG
TTGCTAACAATGATTAATGAACTGTAAAATATTCTGTTACACTACTGACAGATGCAGATGTTCATTTCTTTAGCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34829.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis