Browse Element(s) Details


Os.34876.1.S1_at

Description gb:AK069766.1
DB_XREF= gi:32979790
TID=Os.34876.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.34876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026F21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026F21, full insert sequence.
FL= gb:AK069766.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4009011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40050NANA2+24248435..24249157retrotransposon protein, putative, unclassified
LOC_Os02g40060NANA2+24250189..24251586retrotransposon protein, putative, unclassified
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40080Os.6402.1.S1_at11/112+24262282..24264132Tic20, putative, expressed
LOC_Os02g40090Os.8898.1.S1_s_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40090Os.34876.1.S1_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40100Os.14160.1.S1_at11/112+24270631..24275141expressed protein
LOC_Os02g40110OsAffx.24657.1.S1_at11/112+24277094..24278935expressed protein
LOC_Os02g40120OsAffx.12423.1.S1_at11/112+24282950..24283772hypothetical protein
LOC_Os02g40130OsAffx.24658.1.S1_at11/112+24287266..24288090Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34876.1.S1_at--629--1471Chr02:24264945..24264969 (25 bp)
AGCAAACTGGGACTAATGCTTTCTT
LOC_Os02g40090
Os.34876.1.S1_at--872--5691Chr02:24264935..24264959 (25 bp)
GACTAATGCTTTCTTCTTCACTCAC
LOC_Os02g40090
Os.34876.1.S1_at--406--9551Chr02:24264924..24264948 (25 bp)
TCTTCTTCACTCACTTAATTTCCAG
LOC_Os02g40090
Os.34876.1.S1_at--94--10571Chr02:24264922..24264946 (25 bp)
TTCTTCACTCACTTAATTTCCAGTT
LOC_Os02g40090
Os.34876.1.S1_at--252--9571Chr02:24264921..24264945 (25 bp)
TCTTCACTCACTTAATTTCCAGTTC
LOC_Os02g40090
Os.34876.1.S1_at--860--10511Chr02:24264919..24264943 (25 bp)
TTCACTCACTTAATTTCCAGTTCTT
LOC_Os02g40090
Os.34876.1.S1_at--42--3331Chr02:24264917..24264941 (25 bp)
CACTCACTTAATTTCCAGTTCTTCA
LOC_Os02g40090
Os.34876.1.S1_at--1139--9671Chr02:24264914..24264938 (25 bp)
TCACTTAATTTCCAGTTCTTCATTG
LOC_Os02g40090
Os.34876.1.S1_at--1121--2031Chr02:24264912..24264936 (25 bp)
ACTTAATTTCCAGTTCTTCATTGTA
LOC_Os02g40090
Os.34876.1.S1_at--43--3671Chr02:24264911..24264935 (25 bp)
CTTAATTTCCAGTTCTTCATTGTAT
LOC_Os02g40090
Os.34876.1.S1_at--1143--10491Chr02:24264910..24264934 (25 bp)
TTAATTTCCAGTTCTTCATTGTATT
LOC_Os02g40090
Target Sequence 
AGCAAACTGGGACTAATGCTTTCTTCTTCACTCACTTAATTTCCAGTTCTTCATTGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis