Browse Element(s) Details


Os.35089.1.S1_at

Description gb:AK069013.1
DB_XREF= gi:32979037
TID=Os.35089.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023001P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001P21, full insert sequence.
FL= gb:AK069013.1 gb:AK061463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4087011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40830Os.52729.1.S1_at11/114+24010153..24017810Cullin family protein, expressed
LOC_Os04g40840Os.17516.1.S1_at11/114+24018045..24021616radical SAM domain-containing protein, putative, expressed
LOC_Os04g40850Os.15236.1.S1_at11/114+24021826..2402467526S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os04g40860Os.12079.1.S1_at11/114+24024851..24028652transposon protein, putative, unclassified, expressed
LOC_Os04g40870Os.35089.1.S1_at11/114+24034237..24038366expressed protein
LOC_Os04g40880Os.373.1.S1_s_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40880Os.56121.1.S1_x_at11/114+24048790..24051074Nucleotide-binding protein 1, putative, expressed
LOC_Os04g40890OsAffx.29207.2.S1_at11/114+24053443..24053817hypothetical protein
LOC_Os04g40890OsAffx.29207.1.S1_x_at3/114+24053443..24053817hypothetical protein
LOC_Os04g40900Os.27605.1.S1_at5/114+24057495..24059304expressed protein
LOC_Os04g40910Os.22667.1.S1_at11/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910Os.52534.1.S1_x_at5/114+24060506..24064172F-box domain containing protein, expressed
LOC_Os04g40910OsAffx.16986.1.S1_at4/114+24060506..24064172F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35089.1.S1_at--573--10571Chr04:24037021..24037043 (23 bp)
TTCTCTTATGATCTGCCGGAAGGCT
LOC_Os04g40870
Os.35089.1.S1_at--598--1431Chr04:24037232..24037256 (25 bp)
AGAACCTGTGCACCAACCAATTGAT
LOC_Os04g40870
Os.35089.1.S1_at--755--6571Chr04:24037254..24037278 (25 bp)
GATTCTACTATGAACTCTTCTTCTG
LOC_Os04g40870
Os.35089.1.S1_at--259--9572Chr06:15563282..15563314 (25 bp)
TCTTCTTCTGCTCATCAATCTGATG
NONE
Os.35089.1.S1_at--869--7151Chr04:24037295..24037319 (25 bp)
GTCTCAATCAGATTTTGCACCGCCA
LOC_Os04g40870
Os.35089.1.S1_at--1025--1151Chr04:24038017..24038041 (25 bp)
AGTCAGGGCGCCAAGAATGCACCAC
LOC_Os04g40870
Os.35089.1.S1_at--855--6671Chr04:24038095..24038119 (25 bp)
GTTGCTGTTGGCTTTCTTGATGGAT
LOC_Os04g40870
Os.35089.1.S1_at--1043--6531Chr04:24038175..24038199 (25 bp)
GATTTTTTGCGTCTGATAGCACTGC
LOC_Os04g40870
Os.35089.1.S1_at--731--6491Chr04:24038189..24038213 (25 bp)
GATAGCACTGCATTACACTGTACAC
LOC_Os04g40870
Os.35089.1.S1_at--1101--8551Chr04:24038207..24038231 (25 bp)
TGTACACTCCGTTGCTAACAAAGCC
LOC_Os04g40870
Os.35089.1.S1_at--1090--9311Chr04:24038232..24038256 (25 bp)
TCCCTTTTCCTGAGTGCATATGGCT
LOC_Os04g40870
Target Sequence 
TTCTCTTATGATCTGCCGGAAGGCTCAGAGTTAAATACAGACAGTGTAAAATCAGGACCTTATCTCCGTGAAGAAATTCG
GATGTTGGATGGACTACCAATTGTCCAAGAACCTGTGCACCAACCAATTGATTCTACTATGAACTCTTCTTCTGCTCATC
AATCTGATGTGTCTCAATCAGATTTTGCACCGCCAGCAAACAAGAAACCAGCTAAACCAAAGTGGTTCAAAAGGTGATGA
TGAGGTGAGACAGTCAGGGCGCCAAGAATGCACCACCAGAGGACGACTCTAATGTAGGGGGATAGAGAGTGAAAGCATGA
CAATAATGGGTTGCTGTTGGCTTTCTTGATGGATGGATACACATTGTAAAATGAAACTTTCCAAAGAAATTTCACGAGTG
CTGCAGAATGATTTTTTGCGTCTGATAGCACTGCATTACACTGTACACTCCGTTGCTAACAAAGCCTCCCTTTTCCTGAG
TGCATATGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis