Browse Element(s) Details


Os.35216.1.S1_at

Description gb:AK068488.1
DB_XREF= gi:32978506
TID=Os.35216.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0009G03.9 (P0009G03.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157D04, full insert sequence.
FL= gb:AK068488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3476011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34710OsAffx.24576.1.S1_x_at11/112+20817610..20818650expressed protein
LOC_Os02g34719NANA2+20823053..20823213NA
LOC_Os02g34730NANA2+20826945..20829550transposon protein, putative, Mariner sub-class, expressed
LOC_Os02g34740NANA2+20830524..20832383retrotransposon protein, putative, unclassified
LOC_Os02g34750OsAffx.12351.1.S1_at11/112+20836531..20840346Protein kinase domain containing protein, expressed
LOC_Os02g34760Os.35216.1.S1_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34760Os.35216.2.S1_x_at11/112+20840540..20842125retrotransposon protein, putative, unclassified, expressed
LOC_Os02g34770OsAffx.12352.1.S1_at11/112+20843795..20845282Leucine Rich Repeat family protein
LOC_Os02g34780OsAffx.24577.1.S1_at11/112+20846984..20847190hypothetical protein
LOC_Os02g34790OsAffx.12351.2.S1_at11/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34790OsAffx.12352.1.S1_at1/112+20851531..20855475Leucine Rich Repeat family protein
LOC_Os02g34800OsAffx.12353.1.S1_at11/112+20858661..20859470Leucine Rich Repeat family protein
LOC_Os02g34810Os.26815.1.S1_at11/112+20862392..20866211L-ascorbate peroxidase 8, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35216.1.S1_at--981--8432Chr02:20841925..20841949 (25 bp)
TGGCCATCACCATAGTTGGTCCCCA
LOC_Os02g34760
Os.35216.1.S1_at--1068--7791Chr02:20841942..20841966 (25 bp)
GGTCCCCAAGGCCTCTAAGTGTGAG
LOC_Os02g34760
Os.35216.1.S1_at--926--9772Chr02:20841957..20841981 (25 bp)
TAAGTGTGAGGTCATCTTCGCCTAC
LOC_Os02g34760
Os.35216.1.S1_at--436--9611Chr02:20841968..20841992 (25 bp)
TCATCTTCGCCTACCACTTTTGTTG
LOC_Os02g34760
Os.35216.1.S1_at--998--2032Chr02:20841983..20842007 (25 bp)
ACTTTTGTTGCCATCTCCTACTTGT
LOC_Os02g34760
Os.35216.1.S1_at--544--474Chr12:10298546..10298575 (23 bp)
ATCTCCTACTTGTTGCTTTTGCTTG
NONE
Os.35216.1.S1_at--717--2312Chr02:20842032..20842056 (25 bp)
AAAGGTTGTTGCTGCTATAGTATAT
LOC_Os02g34760
Os.35216.1.S1_at--62--4872Chr02:20842045..20842069 (25 bp)
GCTATAGTATATATCTGTCCTTCAG
LOC_Os02g34760
Os.35216.1.S1_at--422--3872Chr02:20842059..20842083 (25 bp)
CTGTCCTTCAGTTCAGTTCAAGTCT
LOC_Os02g34760
Os.35216.1.S1_at--507--1212Chr02:20842073..20842097 (25 bp)
AGTTCAAGTCTTCTGTTATCCATTA
LOC_Os02g34760
Os.35216.1.S1_at--500--6791Chr02:20842087..20842111 (25 bp)
GTTATCCATTAAATCTATCTAAGTC
LOC_Os02g34760
Target Sequence 
TGGCCATCACCATAGTTGGTCCCCAAGGCCTCTAAGTGTGAGGTCATCTTCGCCTACCACTTTTGTTGCCATCTCCTACT
TGTTGCTTTTGCTTGCTGTTTGGAGAAAAAGGTTGTTGCTGCTATAGTATATATCTGTCCTTCAGTTCAGTTCAAGTCTT
CTGTTATCCATTAAATCTATCTAAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis