Browse Element(s) Details


Os.35349.1.S1_at

Description gb:AK067889.1
DB_XREF= gi:32977907
TID=Os.35349.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124M11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124M11, full insert sequence.
FL= gb:AK067889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5855011/11membrane acyl-CoA binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58480Os.54552.1.S1_at11/114+34568301..34571150EF hand family protein, expressed
LOC_Os04g58490Os.14302.1.S1_s_at1/114+34571720..34572323hypothetical protein
LOC_Os04g58504Os.54466.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.4211.1.S1_at11/114+34572782..34581660expressed protein
LOC_Os04g58504OsAffx.12909.1.S1_at2/114+34572782..34581660expressed protein
LOC_Os04g58520OsAffx.26656.1.S1_x_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58520OsAffx.26656.1.S1_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed
LOC_Os04g58580Os.53677.1.S1_at11/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58580Os.8518.1.S1_x_at6/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0005783cellular_componentendoplasmic reticulum
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0000062molecular_functionacyl-CoA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35349.1.S1_at--737--9591Chr04:34592156..34592180 (25 bp)
TCATTGTGGCCATATAATAGTGTCA
LOC_Os04g58550
Os.35349.1.S1_at--139--9851Chr04:34592130..34592154 (25 bp)
TAAATATGAGATTGCCACGGCTAGG
LOC_Os04g58550
Os.35349.1.S1_at--446--6591Chr04:34592121..34592145 (25 bp)
GATTGCCACGGCTAGGTACTACTAG
LOC_Os04g58550
Os.35349.1.S1_at--62--3351Chr04:34592115..34592139 (25 bp)
CACGGCTAGGTACTACTAGTGGATA
LOC_Os04g58550
Os.35349.1.S1_at--903--10231Chr04:34592088..34592112 (25 bp)
TATTGGTTTGATAGGCACTGCTTCC
LOC_Os04g58550
Os.35349.1.S1_at--229--10791Chr04:34592081..34592105 (25 bp)
TTGATAGGCACTGCTTCCCTGAAAA
LOC_Os04g58550
Os.35349.1.S1_at--620--10071Chr04:34592077..34592101 (25 bp)
TAGGCACTGCTTCCCTGAAAAAGTC
LOC_Os04g58550
Os.35349.1.S1_at--1077--1251Chr04:34592038..34592062 (25 bp)
AGATCAATGAGCAACACTGTCCATG
LOC_Os04g58550
Os.35349.1.S1_at--707--2991Chr04:34592033..34592057 (25 bp)
AATGAGCAACACTGTCCATGTCCCT
LOC_Os04g58550
Os.35349.1.S1_at--730--2471Chr04:34592026..34592050 (25 bp)
AACACTGTCCATGTCCCTTTTATAT
LOC_Os04g58550
Os.35349.1.S1_at--252--7271Chr04:34592020..34592044 (25 bp)
GTCCATGTCCCTTTTATATTCAGGA
LOC_Os04g58550
Target Sequence 
TCATTGTGGCCATATAATAGTGTCAATAAATATGAGATTGCCACGGCTAGGTACTACTAGTGGATATATATTGGTTTGAT
AGGCACTGCTTCCCTGAAAAAGTCTAAACATTATAATGAGATCAATGAGCAACACTGTCCATGTCCCTTTTATATTCAGG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis