Browse Element(s) Details


Os.35371.2.S1_at

Description gb:NM_191311.1
DB_XREF= gi:34909705
GEN=B1131G08.12
TID=Os.35371.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35371 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1131G08.12 (B1131G08.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1131G08.12 (B1131G08.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g554105/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55390Os.54725.1.S1_at10/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55390Os.32752.2.S1_s_at1/111+32236407..32238484retrotransposon protein, putative, unclassified, expressed
LOC_Os01g55400Os.10191.1.S1_at11/111+32243445..32245112hypothetical protein
LOC_Os01g55400OsAffx.23800.1.S1_at9/111+32243445..32245112hypothetical protein
LOC_Os01g55410Os.35371.1.S1_at11/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_x_at8/111+32246342..32249175expressed protein
LOC_Os01g55410Os.35371.2.S1_at5/111+32246342..32249175expressed protein
LOC_Os01g55420Os.13081.1.S1_at11/111+32252714..32253782expressed protein
LOC_Os01g55430Os.31726.1.S1_at11/111+32253984..32256853Tub family protein, expressed
LOC_Os01g55440Os.12657.1.S1_at11/111+32265336..32267032Protein kinase domain containing protein, expressed
LOC_Os01g55450Os.32856.1.S1_at11/111+32270377..32275428protein kinase PK4, putative, expressed
LOC_Os01g55450Os.32856.1.S2_at11/111+32270377..32275428protein kinase PK4, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35371.2.S1_at--319--1831Chr01:32247347..32247803 (25 bp)
ACGCCCCAGTCCTGGGAGGATGTAT
LOC_Os01g55410
Os.35371.2.S1_at--977--9271Chr01:32247788..32247812 (25 bp)
TCCTGGGAGGATGTATACAAGCACA
LOC_Os01g55410
Os.35371.2.S1_at--507--6271Chr01:32247797..32247821 (25 bp)
GATGTATACAAGCACAAATTAGAGC
LOC_Os01g55410
Os.35371.2.S1_at--1098--131Chr01:32247814..32247838 (25 bp)
ATTAGAGCAGAAGTATGTTCGTCCA
LOC_Os01g55410
Os.35371.2.S1_at--510--1511Chr01:32247819..32247843 (25 bp)
AGCAGAAGTATGTTCGTCCAGGAGA
LOC_Os01g55410
Os.35371.2.S1_at--1073--10651NONE
TTCCGCAGGTGGTGGATTGATTGAA
NONE
Os.35371.2.S1_at--890--6579Chr09:18592203..18592227 (25 bp)
GATTGAATGTAGAACACCAGTGCTT
NONE
Os.35371.2.S1_at--762--8998Chr09:18592206..18592230 (25 bp)
TGAATGTAGAACACCAGTGCTTGGG
NONE
Os.35371.2.S1_at--827--6653Chr02:16636919..16636942 (24 bp)
GTTGCGAGACCCAAGCGCGAGTTCG
NONE
Os.35371.2.S1_at--526--5811Chr01:32250772..32250796 (25 bp)
GACCCAAGCGCGAGTTCGCTCGGAA
NONE
Os.35371.2.S1_at--692--9671Chr01:32250811..32250835 (25 bp)
TCACCAAGCGCGAGTTCGCTCGGAA
NONE
Target Sequence 
ACGCCCCAGTCCTGGGAGGATGTATACAAGCACAAATTAGAGCAGAAGTATGTTCGTCCAGGAGAGGATGGGAGGAGCAA
GCTGACAAGTGAATCAAACCAGCTGACGTTCTGGAGTGACTCGCAGGCGGGCAATGGGTCTTCACCATTCCATCATTCCG
CAGGTGGTGGATTGATTGAATGTAGAACACCAGTGCTTGGGGTTGCGAGACCCAAGCGCGAGTTCGCTCGGAAGTTCCCC
CCCTCCATCACCAAGCGCGAGTTCGCTCGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35371.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis