Browse Element(s) Details


Os.35677.1.S1_at

Description gb:AK066332.1
DB_XREF= gi:32976350
TID=Os.35677.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (OJ1217B09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013060C07, full insert sequence.
FL= gb:AK066332.1 gb:AK061907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0906011/111,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09020Os.19283.1.S1_s_at11/113+4661471..4664413oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g09030Os.57179.1.S1_at4/113+4668629..4669186hypothetical protein
LOC_Os03g09040OsAffx.25024.1.S1_at10/113+4671730..4672641hypothetical protein
LOC_Os03g09050OsAffx.12794.1.S1_at11/113+4673954..4674592hypothetical protein
LOC_Os03g09060Os.35677.1.S1_at11/113+4676357..46792501,4-dihydroxy-2-naphthoate phytyltransferase family protein, expressed
LOC_Os03g09070Os.43892.1.S1_at11/113+4681084..4684605leucine-rich repeat family protein, putative, expressed
LOC_Os03g09080Os.17714.1.S1_at10/113+4694250..4698364Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os03g09090Os.23231.1.A1_at10/113+4699765..4703179expressed protein
LOC_Os03g09090Os.53282.1.S1_at1/113+4699765..4703179expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0010236biological_processplastoquinone biosynthesis
GO:0042372biological_processphylloquinone biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004659molecular_functionprenyltransferase activity
GO:0046428molecular_function1,4-dihydroxy-2-naphthoate octaprenyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35677.1.S1_at--34--2131Chr03:4676795..4676819 (25 bp)
ACAGGTTTGGAAGCACTGCCAGCCA
LOC_Os03g09060
Os.35677.1.S1_at--822--6611Chr03:4676703..4676727 (25 bp)
GTTGGCTACAGAATCCCAGTCATTT
LOC_Os03g09060
Os.35677.1.S1_at--696--2431Chr03:4676664..4676688 (25 bp)
AAAAGCCCAGCTATGCATTTCTTCC
LOC_Os03g09060
Os.35677.1.S1_at--552--4931Chr03:4676650..4676674 (25 bp)
GCATTTCTTCCCATCGCAGTAAAGA
LOC_Os03g09060
Os.35677.1.S1_at--845--1251Chr03:4676628..4676652 (25 bp)
AGATTGCCGTTGCACAGGAGGCTCC
LOC_Os03g09060
Os.35677.1.S1_at--627--8011Chr03:4676612..4676636 (25 bp)
GGAGGCTCCCAGTGTGAATTGATTT
LOC_Os03g09060
Os.35677.1.S1_at--35--3171Chr03:4676596..4676620 (25 bp)
AATTGATTTTCATGCCGGGACAGAT
LOC_Os03g09060
Os.35677.1.S1_at--1007--7091Chr03:4676564..4676588 (25 bp)
GTCATGTTCTACCATTACTTCTTCC
LOC_Os03g09060
Os.35677.1.S1_at--925--6931Chr03:4676516..4676540 (25 bp)
GTAGTACACCACTCATCTGGGCAGT
LOC_Os03g09060
Os.35677.1.S1_at--1058--5011Chr03:4676496..4676520 (25 bp)
GCAGTTTCGCATGTGCCTTTAACAC
LOC_Os03g09060
Os.35677.1.S1_at--747--2471Chr03:4676476..4676500 (25 bp)
AACACTTCTAGTTTCCTGGCTAGTG
LOC_Os03g09060
Target Sequence 
ACAGGTTTGGAAGCACTGCCAGCCAAGGCAGTGGAGAGTGTAGAGGATGGTAAATTGCCTGAAACCGGAATGAATGGAGA
GGTACTTGAGTTGTTGGCTACAGAATCCCAGTCATTTATCTCCATGAGAAAAAAAGCCCAGCTATGCATTTCTTCCCATC
GCAGTAAAGATTGCCGTTGCACAGGAGGCTCCCAGTGTGAATTGATTTTCATGCCGGGACAGATAGGACATGTCATGTTC
TACCATTACTTCTTCCTCCCAAGCACCAACAGCTATTTGGTAGTACACCACTCATCTGGGCAGTTTCGCATGTGCCTTTA
ACACTTCTAGTTTCCTGGCTAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis