Browse Element(s) Details

Os.3571.1.S1_at

Description

gb:AK121184.1
DB_XREF= gi:37990807
TID=Os.3571.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.3571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023084M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084M13, full insert sequence.
FL= gb:AK121184.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04930	2/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04880	Os.26392.1.S1_at	11/11	6	+	2139054..2145617	U-box domain containing protein, expressed
LOC_Os06g04890	NA	NA	6	+	2151140..2151538	expressed protein
LOC_Os06g04900	OsAffx.15266.1.S1_x_at	11/11	6	+	2154078..2155717	Hexose carrier protein HEX6, putative
LOC_Os06g04910	Os.16783.1.S1_at	10/11	6	+	2156496..2159577	hydrolase, NUDIX family protein, expressed
LOC_Os06g04920	Os.10583.1.S1_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04920	Os.10583.1.S1_s_at	11/11	6	+	2161624..2168677	Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os06g04930	Os.3571.2.S1_s_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	OsAffx.15267.1.S1_at	11/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.3571.1.S1_at	2/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04930	Os.55511.1.S1_at	1/11	6	+	2169964..2172401	expressed protein
LOC_Os06g04940	Os.37255.1.A1_at	10/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04940	Os.38638.3.S1_x_at	3/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04950	Os.38638.2.S1_at	11/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	OsAffx.27459.4.S1_at	6/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	Os.38638.3.S1_x_at	4/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04960	OsAffx.12420.1.S1_at	2/11	6	+	2183984..2187338	hypothetical protein
LOC_Os06g04970	Os.17050.1.A1_at	10/11	6	+	2188914..2193837	expressed protein
LOC_Os06g04980	Os.3577.1.S1_x_at	5/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	Os.3577.2.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	OsAffx.4692.1.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.3571.1.S1_at--489--195	1	Chr06:2172158..2172182 (25 bp)	ACTGATTTGTTGGACTCTAAGGTTG	LOC_Os06g04930
Os.3571.1.S1_at--223--813	1	Chr06:2172147..2172171 (25 bp)	GGACTCTAAGGTTGAGGCGATCTAT	LOC_Os06g04930
Os.3571.1.S1_at--1053--887	1	NONE	TGAGGCGATCTATATCCGAGGCGGC	NONE
Os.3571.1.S1_at--673--641	1	NONE	GATCTATATCCGAGGCGGCCATTGC	NONE
Os.3571.1.S1_at--713--155	1	Chr06:2169953..2169977 (25 bp)	AGCTTCCTTCATGGATATCTTATCT	NONE
Os.3571.1.S1_at--541--83	1	Chr06:2169943..2169967 (25 bp)	ATGGATATCTTATCTCGCTCTGTTG	NONE
Os.3571.1.S1_at--1083--1015	1	Chr06:2169938..2169962 (25 bp)	TATCTTATCTCGCTCTGTTGTGGAT	NONE
Os.3571.1.S1_at--1002--379	1	Chr06:2169930..2169954 (25 bp)	CTCGCTCTGTTGTGGATAACTGGCT	NONE
Os.3571.1.S1_at--719--751	1	Chr06:2169919..2169943 (25 bp)	GTGGATAACTGGCTACTGATCATGA	NONE
Os.3571.1.S1_at--267--257	1	Chr06:2169913..2169937 (25 bp)	AACTGGCTACTGATCATGATGTTAA	NONE
Os.3571.1.S1_at--905--1049	1	Chr06:2169892..2169916 (25 bp)	TTAATGCTAGCAGATACTCCCTCGT	NONE

Target Sequence

ACTGATTTGTTGGACTCTAAGGTTGAGGCGATCTATATCCGAGGCGGCCATTGCCGGGCTGAAAGCAGCGGCCGTCACTG
CTGTCTGCACCGCGATCCCCACCTTTGCCAGTGTTCGTATGTCCAAGTGGGCAAAGGCCAATCTGGGCAACCCAGTCGCC
AAGACAGTCATCATCACCTACGCTGCTGGCATGGCCTACTTCATCGCCGGGGAGAAGAAGGTGGTGGAGCTGTCCAGGAA
GCACTCCCTCGAGGCTGCAAAGGCCAGGGCTAAATCTNNNNATNNTNNNNNNNANATCGAACTAGATTTNCNNANCAATA
TGGCATCAATGNACATGCCCTNTTTATCCCANGAGAGAATACTACCAGTGTTGTCTCTTCTGTGTTCTTNGCATGCATGT
GTNTGTTCACTGTGTTATATGCAGTGAAAATTGTGAGATGATATNCCTAAGTNCAATTAATTAAGGTGTGGGTGCTAATA
AAAGCTATGCATATGAGCAGGAGCTTCCTTCATGGATATCTTATCTCGCTCTGTTGTGGATAACTGGCTACTGATCATGA
TGTTAATGCTAGCAGATACTCCCTCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis