Browse Element(s) Details


Os.35858.2.S1_x_at

Description gb:NM_192941.1
DB_XREF= gi:34912965
GEN=B1158C05.10
TID=Os.35858.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35858 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) similar to protein kinase (B1158C05.10), mRNA.
PROD=similar to protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4411011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g44069Os.33373.1.S2_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S2_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44069Os.33373.1.S1_x_at11/111+25583849..25590634Acyltransferase family protein, expressed
LOC_Os01g44090Os.36473.1.S1_at11/111+25598549..25600354expressed protein
LOC_Os01g44100NANA1+25605750..25606644hypothetical protein
LOC_Os01g44110Os.35858.2.S1_x_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.2.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44110Os.35858.1.S1_at11/111+25608601..25613462Protein kinase domain containing protein, expressed
LOC_Os01g44120Os.12043.1.S1_at11/111+25615240..25616005expressed protein
LOC_Os01g44130OsAffx.9099.1.S1_x_at10/111+25618186..25624920Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g44140NANA1+25628529..25629251hypothetical protein
LOC_Os01g44150OsAffx.13786.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150OsAffx.22699.1.S1_x_at2/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_x_at1/111+25630989..25636728retrotransposon protein, putative, unclassified
LOC_Os01g44150Os.52561.1.S1_at1/111+25630989..25636728retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35858.2.S1_x_at--37--6151Chr01:25610363..25610387 (25 bp)
GAGGTCGAGGCTATTGGCCATGTCC
LOC_Os01g44110
Os.35858.2.S1_x_at--1099--8431Chr01:25610378..25610402 (25 bp)
GGCCATGTCCGGCATAAGAATTTGG
LOC_Os01g44110
Os.35858.2.S1_x_at--902--11Chr01:25610397..25610421 (25 bp)
ATTTGGTTCGGCTGTTGGGTTACTG
LOC_Os01g44110
Os.35858.2.S1_x_at--1036--8171Chr01:25612273..25612297 (25 bp)
GGAACCTGTTGATTACAGCCGCTCT
LOC_Os01g44110
Os.35858.2.S1_x_at--233--3391Chr01:25612288..25612308 (21 bp)
CAGCCGCTCTGGCAATGAGGTCAAT
LOC_Os01g44110
Os.35858.2.S1_x_at--42--1031Chr01:25612532..25612556 (25 bp)
AGGTCAATCTTGTCGAGTGGCTCAA
LOC_Os01g44110
Os.35858.2.S1_x_at--629--7511Chr01:25612588..25612612 (25 bp)
GTGGTTGATCCAATCCTAGAGGTTA
LOC_Os01g44110
Os.35858.2.S1_x_at--625--9791Chr01:25612632..25612656 (25 bp)
TAAGCGGGCTCTTTTGGTTGCGTTA
LOC_Os01g44110
Os.35858.2.S1_x_at--1155--3971Chr01:25612657..25612681 (25 bp)
CGGTGTGTTGATCCTGACTCTGAAA
LOC_Os01g44110
Os.35858.2.S1_x_at--740--6251Chr01:25612692..25612716 (25 bp)
GATGGGCCAAGTTGTTAGGATGCTT
LOC_Os01g44110
Os.35858.2.S1_x_at--1016--5031Chr01:25612872..25612896 (25 bp)
GCAGAGGGCTCAAATTCAACCGAAT
LOC_Os01g44110
Target Sequence 
GAGGTCGAGGCTATTGGCCATGTCCGGCATAAGAATTTGGTTCGGCTGTTGGGTTACTGTGTTGAGGGAGTGAATAGATA
TGTTGCACCTGAGTATGCTAACACGGGCATGTTGAATGAAAAGAGCGATGTTTATAGTTTTGGTGTTCTCTTGTTGGAAA
CTGTGACAGGAAGGGAACCTGTTGATTACAGCCGCTCTGGCAATGAGGTCAATCTTGTCGAGTGGCTCAAAATAATGGTG
GCAAACCGGAGAGCAGAAGAAGTGGTTGATCCAATCCTAGAGGTTAGACCAACTGTTAGAGCTATTAAGCGGGCTCTTTT
GGTTGCGTTACGGTGTGTTGATCCTGACTCTGAAAAGAGACCTAAGATGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAG
AAGTTCCATACCGGGAGGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTGCAGAGGGCTCA
AATTCAACCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35858.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis