Browse Element(s) Details


Os.36033.1.S1_at

Description gb:AK064608.1
DB_XREF= gi:32974626
TID=Os.36033.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucine rich repeat containing protein kinase (P0431H09.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-A08, full insert sequence.
FL= gb:AK064608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4991010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49880OsAffx.870.2.S1_at11/111+28977628..28979732expressed protein
LOC_Os01g49890Os.27749.1.S1_at11/111+28980894..28982795Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49930Os.41646.1.S1_x_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.18107.1.A1_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.41646.1.S1_at8/111+29002361..29007000expressed protein
LOC_Os01g49940Os.36273.2.S1_x_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49940Os.36273.1.S1_at11/111+29010718..29019203Symplekin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36033.1.S1_at--863--7691Chr01:28994403..28994427 (25 bp)
GGGTCATGCTCCTGGAGGTCTTCAC
LOC_Os01g49910
Os.36033.1.S1_at--838--731Chr01:28994450..28994474 (25 bp)
ATGTTCGTCGGAGAGCTGAGCTTGA
LOC_Os01g49910
Os.36033.1.S1_at--1113--8491Chr01:28994527..28994551 (25 bp)
TGGCATCTCTCTGTATGACGACACG
LOC_Os01g49910
Os.36033.1.S1_at--1001--2171Chr01:28994547..28994571 (25 bp)
ACACGGTGAGCAGCGATGATGCCCA
LOC_Os01g49910
Os.36033.1.S1_at--907--8931Chr01:28994673..28994697 (25 bp)
TGACTGTGAAACTGCAGCGGATCAA
LOC_Os01g49910
Os.36033.1.S1_at--1009--2651Chr01:28994709..28994733 (25 bp)
AAGCCTAGATAGTCTTGTCCTGCAG
LOC_Os01g49910
Os.36033.1.S1_at--472--6471Chr01:28994744..28994768 (25 bp)
GATAACCCAAAGCTGGCAAGGCCAT
LOC_Os01g49910
Os.36033.1.S1_at--131--5191NONE
GCAAGGCCATGTGCCATCTGTGGTG
NONE
Os.36033.1.S1_at--359--5551Chr01:28994808..28994832 (25 bp)
GAAAGCTGTAGCCTTCCTTGAAAAG
LOC_Os01g49910
Os.36033.1.S1_at--869--10732Chr09:16935819..16935876 (25 bp)
TTGCAGGTTTGCAGCCATCTAACAA
NONE
Os.36033.1.S1_at--1036--10071Chr01:28994910..28994934 (25 bp)
TAGGGCTTAATCCTCCAATAACCTG
LOC_Os01g49910
Target Sequence 
GGGTCATGCTCCTGGAGGTCTTCACGGGGAAGAAGCCAACCGACGCCATGTTCGTCGGAGAGCTGAGCTTGAGGGAGTGG
GTCAACCGAGCGCTCCCGTCAAGGCTCGCCGACGTCGTACATCCTGGCATCTCTCTGTATGACGACACGGTGAGCAGCGA
TGATGCCCAAGGTGAATCAACCGGCAGCAGGAGCTGCTTAGCGCAGCTGCTGGATTTGGGGCTGCAGTGTACCAGAGACN
TGCCTGAGGACAGGGTGACGATGAAGGATGTGACTGTGAAACTGCAGCGGATCAAGGAGGTATTACAAGCCTAGATAGTC
TTGTCCTGCAGCCCTGCAGATGATAACCCAAAGCTGGCAAGGCCATGTGCCATCTGTGGTGGTTGCAAATGCTGAACTGC
ATCATGAAAGCTGTAGCCTTCCTTGAAAAGATACCTGTAACAGTAGTTGAGTTGCAGGTTTGCAGCCATCTAACAAAAAG
TAATATACTACGTGTTAGAGAGTTGTTTAGGGCTTAATCCTCCAATAACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36033.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis