Browse Element(s) Details


Os.36178.2.S1_at

Description gb:AK062969.1
DB_XREF= gi:32972987
TID=Os.36178.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36178 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0691E06.5 (P0691E06.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E02, full insert sequence.
FL= gb:AK062969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0607011/11expressed protein
LOC_Os01g719505/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06030Os.45976.1.S1_x_at3/117+2921657..2925402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06040Os.46306.1.S1_x_at4/117+2927829..2930921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06050OsAffx.16112.1.S1_at10/117+2933971..2935109hypothetical protein
LOC_Os07g06060Os.47878.1.S1_at10/117+2938593..2941125expressed protein
LOC_Os07g06060OsAffx.28297.1.S1_at9/117+2938593..2941125expressed protein
LOC_Os07g06070Os.36178.2.S1_at11/117+2941639..2942167expressed protein
LOC_Os07g06080Os.5026.1.S1_at11/117+2943527..2945080FAD dependent oxidoreductase family protein, expressed
LOC_Os07g06090Os.14155.1.S1_at9/117+2945077..2947478expressed protein
LOC_Os07g06100OsAffx.28298.1.S1_at11/117+2951661..2952669hypothetical protein
LOC_Os07g06110OsAffx.16451.1.A1_x_at5/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.16451.1.A1_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110Os.45161.1.A1_x_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8279.1.S1_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8201.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.22699.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06120NANA7+2966018..2969022hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36178.2.S1_at--347--1391Chr07:2941699..2941723 (25 bp)
AGACGTTGCGCTTGCAGATGACGGC
LOC_Os07g06070
Os.36178.2.S1_at--947--1353Chr07:2941759..2941783 (25 bp)
AGAGCACAAGCACGCGGATTTCCCA
LOC_Os07g06070
Os.36178.2.S1_at--952--8753Chr07:2941848..2941872 (25 bp)
TGTAGCACGATTCCAGCGTTTCTTC
LOC_Os07g06070
Os.36178.2.S1_at--798--7812Chr07:2941878..2941902 (25 bp)
GGTCATTGCCTAATCCTCTCGGAAA
LOC_Os07g06070
Os.36178.2.S1_at--422--572Chr07:2941890..2941914 (25 bp)
ATCCTCTCGGAAACACTGATCTCGT
LOC_Os07g06070
Os.36178.2.S1_at--7--7151Chr07:2941913..2941937 (25 bp)
GTCTTCCCTCGGTGAACGCATTTTT
LOC_Os07g06070
Os.36178.2.S1_at--643--2371Chr07:2941986..2942010 (25 bp)
AAACTGACCTGATTTGGCTAAACTG
LOC_Os07g06070
Os.36178.2.S1_at--563--6491Chr07:2942010..2942034 (25 bp)
GATTCAACCATCTCGAAGTCTTGCA
LOC_Os07g06070
Os.36178.2.S1_at--883--1151Chr07:2942026..2942050 (25 bp)
AGTCTTGCATACTGTGTACTTGTGT
LOC_Os07g06070
Os.36178.2.S1_at--475--4931Chr07:2942052..2942076 (25 bp)
GCTTGTCTACTACTGATTTGGCTAA
LOC_Os07g06070
Os.36178.2.S1_at--1120--4832Chr07:2942072..2942096 (25 bp)
GCTAAACTCCTTCCTTTGTTAGTGA
LOC_Os07g06070
Target Sequence 
AGACGTTGCGCTTGCAGATGACGGCGGAGAAGAGGAGGAACACCTGCAGCGCGAGGCTGGAGAGCACAAGCACGCGGATT
TCCCACGCGTTCCACAAGGCCACCACGCTTGCCATGGATCCCTCCATCTTCGTCTTCCAATCTGCCGCCTGTAGCACGAT
TCCAGCGTTTCTTCTCCCCGGTCATTGCCTAATCCTCTCGGAAACACTGATCTCGTCTTCCCTCGGTGAACGCATTTTTT
TTTCTCGATGGAAAGCTTAAAACGCGTAAAGGAGAAACATGCCAAGAAAACTGACCTGATTTGGCTAAACTGATTCAACC
ATCTCGAAGTCTTGCATACTGTGTACTTGTGTAGCTTGTCTACTACTGATTTGGCTAAACTCCTTCCTTTGTTAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36178.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis