Browse Element(s) Details


Os.36236.1.S1_at

Description gb:AK064115.1
DB_XREF= gi:32974133
TID=Os.36236.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) receptor kinase-like protein (P0697D09.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A04, full insert sequence.
FL= gb:AK064115.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2639011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein
LOC_Os01g26370Os.9007.1.S1_s_at11/111+14938206..14941824expressed protein
LOC_Os01g26370Os.27319.1.A1_at11/111+14938206..14941824expressed protein
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26400NANA1+14965691..14967340retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g26410OsAffx.21088.2.S1_s_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.2.S1_x_at11/111+14970054..14970850hypothetical protein
LOC_Os01g26410OsAffx.21088.1.S1_at8/111+14970054..14970850hypothetical protein
LOC_Os01g26720OsAffx.32056.1.S1_x_at5/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g26720OsAffx.32056.1.S1_at3/111+14974296..14976687transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36236.1.S1_at--628--1251Chr01:14950276..14950300 (25 bp)
AGATAGCTGGTACCTTTGGGTCTCA
LOC_Os01g26390
Os.36236.1.S1_at--610--8631Chr01:14950292..14950316 (25 bp)
TGGGTCTCATTTCCAGCTCTCCATA
LOC_Os01g26390
Os.36236.1.S1_at--694--4811Chr01:14950307..14950331 (25 bp)
GCTCTCCATATCTCTCGTATAACAG
LOC_Os01g26390
Os.36236.1.S1_at--563--6331Chr01:14950367..14950391 (25 bp)
GATGCAGTTGTCGTGGCAGCCGATC
LOC_Os01g26390
Os.36236.1.S1_at--629--4051Chr01:14950387..14950411 (25 bp)
CGATCTCATCCAGTCTTATTTGCAG
LOC_Os01g26390
Os.36236.1.S1_at--1077--3432Chr01:14950517..14950541 (25 bp)
CAGTTTTGCTATATGTTTGCCGAAA
LOC_Os01g26390
Os.36236.1.S1_at--566--4414Chr01:14950554..14950578 (25 bp)
GCCTGACACCGGTCCTAGTAATGTA
LOC_Os01g26390
Os.36236.1.S1_at--567--7792Chr02:31112914..31112934 (21 bp)
GGTCCTAGTAATGTAGATCCGCCCC
NONE
Os.36236.1.S1_at--32--10051Chr01:14950577..14950601 (25 bp)
TAGATCCGCCCCTGTTTGCAGAGTT
LOC_Os01g26390
Os.36236.1.S1_at--725--8771Chr01:14950601..14950625 (25 bp)
TGTTTTCATAGTCAAGTTTCCCTTC
LOC_Os01g26390
Os.36236.1.S1_at--821--4571Chr01:14950718..14950742 (25 bp)
GCGCGGGCAGCTTCTTATGTAATGT
LOC_Os01g26390
Target Sequence 
AGATAGCTGGTACCTTTGGGTCTCATTTCCAGCTCTCCATATCTCTCGTATAACAGCATCAAGGCATCAATTGTAATAAT
GAAGGTATGTGGATGCAGTTGTCGTGGCAGCCGATCTCATCCAGTCTTATTTGCAGACAGTGGCGGATCCAGAAAATCGA
TTCGTTGGTGTTATAACATGTCTATCGGTGTCATAATATGGTAATTATGCTTAGATCATGGTGTTATGACATATGGATAA
GCAGTTTTGCTATATGTTTGCCGAAAGTCGTCGGTGTCGCCTGACACCGGTCCTAGTAATGTAGATCCGCCCCTGTTTGC
AGAGTTGTTTTCATAGTCAAGTTTCCCTTCCCCTTTATAAGGATAGTTGCTTTTAAGATATTTTGTTTTGAGGCGATGTA
TCAGGGATTTACTTAATAACTAGAAAGGTAGCCCGCGCACATGCGCGGGCAGCTTCTTATGTAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis