Browse Element(s) Details


Os.36376.2.S1_x_at

Description gb:NM_192885.1
DB_XREF= gi:34912853
GEN=P0006C01.11
TID=Os.36376.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36376 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0006C01.11 (P0006C01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0006C01.11 (P0006C01.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g436106/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os05g506802/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43570OsAffx.21337.2.S1_s_at11/111+25282807..25283124hypothetical protein
LOC_Os01g43570OsAffx.21337.1.S1_x_at6/111+25282807..25283124hypothetical protein
LOC_Os01g43580Os.16303.3.S1_x_at10/111+25287927..25289674expressed protein
LOC_Os01g43590Os.40015.1.S1_at11/111+25294258..25295895HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g43600OsAffx.23648.2.S1_at11/111+25302840..25304259hypothetical protein
LOC_Os01g43610Os.36376.1.S1_at11/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43610Os.36376.2.S1_x_at6/111+25308116..25309514uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os01g43620OsAffx.23649.2.S1_at10/111+25315123..25319617hypothetical protein
LOC_Os01g43630Os.24505.1.S1_at11/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43630Os.7815.1.S1_at3/111+25321591..25329703adaptin family protein, putative, expressed
LOC_Os01g43640Os.4996.1.S1_at3/111+25331219..25331461TOM7, putative

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36376.2.S1_x_at--602--4651Chr01:25308680..25308704 (25 bp)
GCGTCGGCGAGGATCACCAGCGACC
LOC_Os01g43610
Os.36376.2.S1_x_at--1024--5371Chr01:25308615..25308639 (25 bp)
GAAGAAGCAGCACAACGACATGAAG
LOC_Os01g43610
Os.36376.2.S1_x_at--358--931Chr01:25308566..25308590 (25 bp)
AGGCAGCTGGGCACGGACGACGACA
LOC_Os01g43610
Os.36376.2.S1_x_at--242--6992Chr05:28968854..28968878 (25 bp)
GTACGCCGACTTCCGGAGCTCGATG
LOC_Os05g50680
Os.36376.2.S1_x_at--366--4232Chr05:28968859..28968883 (25 bp)
CCGACTTCCGGAGCTCGATGGTGGA
LOC_Os05g50680
Os.36376.2.S1_x_at--829--8391Chr01:25308451..25308475 (25 bp)
GGCGCATCTGCAGCGTGCCGGAGAT
LOC_Os01g43610
Os.36376.2.S1_x_at--1127--8051Chr01:25307187..25307208 (22 bp)
GGAGAACAAGCATAAGCCGCCGCCG
NONE
Os.36376.2.S1_x_at--1110--4131Chr01:25307150..25307174 (25 bp)
CGCGGCGAGCGGGTCTTCAGATTCC
NONE
Os.36376.2.S1_x_at--906--2591Chr01:25307024..25307137 (25 bp)
AACGCCGCGAGAGCAACGTTCGGTT
NONE
Os.36376.2.S1_x_at--991--5551Chr01:25307014..25307127 (25 bp)
GAGCAACGTTCGGTTGCCCGTGTTC
NONE
Os.36376.2.S1_x_at--1157--9811Chr01:25307006..25307030 (25 bp)
TTCGGTTGCCCGTGTTCGTGCGTGC
NONE
Target Sequence 
GCGTCGGCGAGGATCACCAGCGACCCGGCCGACGCCTTCCGGCCGGTGGTATCCGTGGCGGCGACGAAGAAGCAGCACAA
CGACATGAAGAAGAAGGAGGAGACGGCGATCAAGAGGCAGCTGGGCACGGACGACGACACCGCCGCCGGCGCGGGCATGG
CGGTGGTGAAGCGGTCGAGCAACCCGTACGCCGACTTCCGGAGCTCGATGGTGGAGATGGTCGTGGAGCGGCGCATCTGC
AGCGTGCCGGAGATGGAGGAGCTCCTGGGGTCGTACCTCTCGCTCAACTCGCCGCAGCACCACCCGGCCATCCTCGCCGC
CTTCGAGGACGTATGGGAGGCCGTCTTCGGCGAGGAGAACAAGCATAAGCCGCCGCCGCGCTTGTCCGCACGCGGCGAGC
GGGTCTTCAGATTCCCGCCCCCGCGCGAACGCCGCGAGAGCAACGTTCGGTTGCCCGTGTTCGTGCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36376.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis