Browse Element(s) Details


Os.36736.1.S1_x_at

Description gb:AK062778.1
DB_XREF= gi:32972796
TID=Os.36736.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-A11, full insert sequence.
FL= gb:AK062778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g218402/11retrotransposon protein, putative, unclassified
LOC_Os08g146902/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g061001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g312801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g153401/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g363301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g139801/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g21810OsAffx.22465.1.S1_at1/1111+12040807..12041834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21810OsAffx.20597.1.S1_at1/1111+12040807..12041834retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21820OsAffx.10237.1.S1_at1/1111+12044811..12046367retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21830OsAffx.22385.1.S1_x_at7/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21830Os.46862.1.S1_at3/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21830OsAffx.20329.1.S1_at1/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21840Os.36736.1.S1_x_at2/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.46995.1.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.21387.3.S1_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840OsAffx.18435.1.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.36736.1.S1_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.21387.3.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21850OsAffx.1646.1.S1_x_at1/1111+12066462..12071866retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21860OsAffx.31080.1.S1_at11/1111+12072435..12074139hypothetical protein
LOC_Os11g21870Os.45173.1.S1_x_at1/1111+12075131..12078258retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21880OsAffx.18924.4.S1_at10/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.18924.2.S1_x_at7/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.19842.1.S1_at2/1111+12078314..12079268hypothetical protein
LOC_Os11g21890OsAffx.411.1.S1_at2/1111+12082901..12087291transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36736.1.S1_x_at--808--9931Chr11:23539953..23539977 (25 bp)
TACGTGCCCTTGCTCCGGCCAGAGG
NONE
Os.36736.1.S1_x_at--1098--1651Chr11:23540028..23540052 (25 bp)
AGCCCTAGCTCGATCCGCGGACGGA
NONE
Os.36736.1.S1_x_at--440--1591Chr11:23540081..23540105 (25 bp)
AGCTCGGCCGCATCACGGATGACCG
NONE
Os.36736.1.S1_x_at--431--4971Chr11:23540090..23540114 (25 bp)
GCATCACGGATGACCGCCGCGGCTG
NONE
Os.36736.1.S1_x_at--522--4591NONE
GCGAATCAGTCAGAGCCCGAGGGAG
NONE
Os.36736.1.S1_x_at--912--7632Chr11:23542426..23542450 (25 bp)
GGGAGTTACGGATCCAAGCAAGGAC
NONE
Os.36736.1.S1_x_at--905--552Chr12:2407884..2408081 (25 bp)
ATCCAAGCAAGGACCAAGAACCGCA
NONE
Os.36736.1.S1_x_at--22--14948Chr12:6131853..6131873 (21 bp)
AGCAAGAGGTCGGAGATGAAGCTTC
NONE
Os.36736.1.S1_x_at--665--8511Chr11:23543900..23543924 (25 bp)
TGGCAATGGAGTGCCGCTGCCTTAA
NONE
Os.36736.1.S1_x_at--1131--36551Chr12:19195371..19195395 (25 bp)
CTTACCTACTTCTGTTTTTGGAATG
NONE
Os.36736.1.S1_x_at--693--36119Chr12:18873502..18873526 (25 bp)
CTTGATATTTCAGCTATGAGTTCGT
NONE
Target Sequence 
TACGTGCCCTTGCTCCGGCCAGAGGGGCTCCCCTCGCAGAGGCTTCTTCTCCGGGGGCCACCTTCCGTCGGGGGCAGCCC
TAGCTCGATCCGCGGACGGAGCAGAGGCAGCGCGGCGCGGNGCGGCGCAGCTCGGCCGCATCACGGATGACCGCCGCGGC
TGCCATTCCGGGGCGGCGAATCAGTCAGAGCCCGAGGGAGTTACGGATCCAAGCAAGGACCAAGAACCGCAAGACTTTGA
GCAAGAGGTCGGAGATGAAGCTTCGGAGAATCCCTACGCTTACTACCAGGAGGGTGATGAAGACGATGGCGCCCAGTAGG
TCTTAGTTACGGTCGTTGCCTGTGGCAATGGAGTGCCGCTGCCTTAACTCCGCTGCCTTACCTACTTCTGTTTTTGGAAT
GTATTCCGGACCGCTCGGTCCGATGATTTAAGACTGTGCCTGCGGGCTTATGATGTAATAATTCGTACTAGACTCTCGTG
TATGTGCACTTGATATTTCAGCTATGAGTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36736.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis