Browse Element(s) Details


Os.36764.1.S1_x_at

Description gb:AK062715.1
DB_XREF= gi:32972733
TID=Os.36764.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C07, full insert sequence.
FL= gb:AK062715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g080909/11small nuclear ribonucleoprotein F, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08070OsAffx.11936.1.S1_at11/112+4247469..4251022SBP domain containing protein, expressed
LOC_Os02g08080Os.54137.1.S1_at11/112+4264386..4268837expressed protein
LOC_Os02g08090Os.46427.1.A1_s_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090OsAffx.2545.1.S1_at11/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08090Os.36764.1.S1_x_at9/112+4270607..4274259small nuclear ribonucleoprotein F, putative, expressed
LOC_Os02g08100Os.10669.1.S1_at11/112+4280499..42859264-coumarate-CoA ligase 1, putative, expressed
LOC_Os02g08110Os.50143.1.S1_at10/112+4286996..4288826plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os02g08120Os.17215.1.S2_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.17215.1.S1_at11/112+4293245..4299056Calmodulin-binding protein, putative, expressed
LOC_Os02g08120Os.51521.1.S1_at1/112+4293245..4299056Calmodulin-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36764.1.S1_x_at--339--4311NONE
CCTTCAATGGCGACTGTGCCAGTTA
NONE
Os.36764.1.S1_x_at--323--8391Chr02:4272127..4272148 (22 bp)
GGCGACTGTGCCAGTTAACCCGAAG
LOC_Os02g08090
Os.36764.1.S1_x_at--52--4191Chr02:4272118..4272142 (25 bp)
GCCAGTTAACCCGAAGCCTTTCTTG
LOC_Os02g08090
Os.36764.1.S1_x_at--256--8631Chr02:4271562..4271586 (25 bp)
TGGGCAATTCTCTGGAAACTTGGGT
LOC_Os02g08090
Os.36764.1.S1_x_at--1144--9851NONE
TACTGATAAGGTGCAACAACGTTTT
NONE
Os.36764.1.S1_x_at--616--10031Chr02:4270800..4270824 (25 bp)
TAGAGGATGCGGAATGAGATAGCCC
LOC_Os02g08090
Os.36764.1.S1_x_at--389--6491Chr02:4270783..4270807 (25 bp)
GATAGCCCGGGCCATGTCCAGATTG
LOC_Os02g08090
Os.36764.1.S1_x_at--453--6331Chr02:4270709..4270733 (25 bp)
GATGCAGATTGACCTGGATCTTTAA
LOC_Os02g08090
Os.36764.1.S1_x_at--716--7211Chr02:4270648..4270672 (25 bp)
GTCGTTGCTCGGAATGTGTGAGATC
LOC_Os02g08090
Os.36764.1.S1_x_at--581--7471Chr02:4270633..4270657 (25 bp)
GTGTGAGATCATATTTCGTAAGAAA
LOC_Os02g08090
Os.36764.1.S1_x_at--811--9391Chr02:4270618..4270642 (25 bp)
TCGTAAGAAAATACCATTTGCCTGT
LOC_Os02g08090
Target Sequence 
CCTTCAATGGCGACTGTGCCAGTTAACCCGAAGCCTTTCTTGAACAACCTGACAGGGAAGCCTGTCATTGTCAAACTTAA
GTGGGGTATGGAATACAAAGGATATCTTGTTTCTGTCGACTCTTATATGAATCTGCAGCTGGCTAATACAGAGGAGTATA
TTGATGGGCAATTCTCTGGAAACTTGGGTGAGATACTGATAAGGTGCAACAACGTTTTGTATCTCCGAGGCGTTCCAGAG
GATACCGAGATAGAGGATGCGGAATGAGATAGCCCGGGCCATGTCCAGATTGATTATTGTAATATGCTGCTGACATGAAC
AATTAAGTGTCATGTACAACTGATGCAGATTGACCTGGATCTTTAACTATGCCATGATATGGTAATGTTATGCGTTGAAA
CTGTCGTTGCTCGGAATGTGTGAGATCATATTTCGTAAGAAAATACCATTTGCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36764.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis