Browse Element(s) Details

Os.36767.1.S1_at

Description

gb:AK062711.1
DB_XREF= gi:32972729
TID=Os.36767.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0083M16.33 (OSJNBa0083M16.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-C02, full insert sequence.
FL= gb:AK062711.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g04330	11/11	EF hand family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g04290	Os.36438.1.S1_at	5/11	1	+	1903780..1906469	endo-1,4-beta-xylanase, putative
LOC_Os01g04290	OsAffx.14829.2.S1_x_at	1/11	1	+	1903780..1906469	endo-1,4-beta-xylanase, putative
LOC_Os01g04300	Os.6014.2.S1_at	11/11	1	+	1909419..1911877	endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300	Os.6014.2.S1_x_at	11/11	1	+	1909419..1911877	endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300	OsAffx.14829.2.S1_x_at	1/11	1	+	1909419..1911877	endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04310	NA	NA	1	+	1916551..1917233	transposon protein, putative, unclassified
LOC_Os01g04320	OsAffx.10903.2.S1_at	11/11	1	+	1922127..1923305	transposon protein, putative, unclassified
LOC_Os01g04330	Os.36767.1.S1_at	11/11	1	+	1927818..1928706	EF hand family protein, expressed
LOC_Os01g04340	Os.36328.1.S1_at	11/11	1	+	1930919..1931726	16.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350	Os.14405.1.S1_at	11/11	1	+	1937814..1938713	Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360	OsAffx.10905.3.S1_at	11/11	1	+	1941063..1941813	16.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370	Os.4775.2.S1_at	11/11	1	+	1945553..1946389	16.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380	Os.4775.1.S1_at	11/11	1	+	1948732..1949485	16.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380	Os.57467.1.S1_x_at	1/11	1	+	1948732..1949485	16.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390	Os.51285.1.S1_at	11/11	1	+	1951950..1952727	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009408	biological_process	response to heat
GO:0009409	biological_process	response to cold
GO:0009612	biological_process	response to mechanical stimulus
GO:0009646	biological_process	response to absence of light
GO:0009733	biological_process	response to auxin stimulus
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0010038	biological_process	response to metal ion
GO:0019722	biological_process	calcium-mediated signaling
GO:0042542	biological_process	response to hydrogen peroxide
GO:0048574	biological_process	long-day photoperiodism, flowering
GO:0005509	molecular_function	calcium ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.36767.1.S1_at--903--323	1	Chr01:1928117..1928141 (25 bp)	CAAGAAGATGATGTGCCGTGATGCC	LOC_Os01g04330
Os.36767.1.S1_at--1139--101	1	Chr01:1928044..1928068 (25 bp)	AGGTCATCTAGATGTGCTCGCTTCT	LOC_Os01g04330
Os.36767.1.S1_at--1006--909	1	Chr01:1928030..1928054 (25 bp)	TGCTCGCTTCTGTTTGTCATTATTT	LOC_Os01g04330
Os.36767.1.S1_at--711--1015	1	Chr01:1927972..1927996 (25 bp)	TATCGATCTGAATCCATGAGACCAT	LOC_Os01g04330
Os.36767.1.S1_at--58--601	1	Chr01:1927955..1927979 (25 bp)	GAGACCATGACTGATGCTTCCATGT	LOC_Os01g04330
Os.36767.1.S1_at--39--1069	1	Chr01:1927938..1927962 (25 bp)	TTCCATGTGTAATTAGCAGCGCCGT	LOC_Os01g04330
Os.36767.1.S1_at--240--151	1	Chr01:1927924..1927948 (25 bp)	AGCAGCGCCGTGTATATTATTATAT	LOC_Os01g04330
Os.36767.1.S1_at--718--655	1	Chr01:1927897..1927921 (25 bp)	GATTATGTGTACACCGATCTGCTGA	LOC_Os01g04330
Os.36767.1.S1_at--1091--177	1	Chr01:1927885..1927909 (25 bp)	ACCGATCTGCTGATGTATGCTACTT	LOC_Os01g04330
Os.36767.1.S1_at--298--583	1	Chr01:1927853..1927877 (25 bp)	GACCAGCTAAGATTTGGCCGAACTT	LOC_Os01g04330
Os.36767.1.S1_at--1040--147	1	Chr01:1927820..1927844 (25 bp)	AGAATTGCTGGTCATCTTCTCTTCC	LOC_Os01g04330

Target Sequence

CAAGAAGATGATGTGCCGTGATGCCGNTGCAACCGGCGGCGCTGACAAGGCCAAGACGGAGTAAAANCAGTGTCAGGTCA
TCTAGATGTGCTCGCTTCTGTTTGTCATTATTTTGACCTAGAAATGATGTAATAAAAGGGTAGTAATATCGATCTGAATC
CATGAGACCATGACTGATGCTTCCATGTGTAATTAGCAGCGCCGTGTATATTATTATATGTGATTATGTGTACACCGATC
TGCTGATGTATGCTACTTTGATCTGGACCAGCTAAGATTTGGCCGAACTTTTAATNGACAGAATTGCTGGTCATCTTCTC
TTCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis