Browse Element(s) Details


Os.36953.1.S1_at

Description gb:AK062302.1
DB_XREF= gi:32972320
TID=Os.36953.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36953 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434A03.36 (P0434A03.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H09, full insert sequence.
FL= gb:AK062302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2978010/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29740Os.47463.1.S1_x_at2/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740Os.14491.2.S1_x_at1/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29750OsAffx.16482.1.S1_x_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750OsAffx.16482.1.S1_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750Os.46631.1.S1_x_at3/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29760Os.20514.1.S1_x_at11/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29760OsAffx.22518.1.S1_x_at1/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29770Os.19330.3.S1_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29770Os.19330.1.S1_x_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29780Os.36953.2.S1_x_at11/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780Os.36953.1.S1_at10/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein
LOC_Os07g29810OsAffx.28664.1.S1_at11/117+17522393..17526402NB-ARC domain containing protein
LOC_Os07g29820Os.26923.1.A1_at9/117+17527858..17533293NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36953.1.S1_at--511--3671Chr07:17504352..17504376 (25 bp)
CTTTTGTAATATAGGATTCTCTGTG
LOC_Os07g29780
Os.36953.1.S1_at--451--6571Chr07:17504338..17504362 (25 bp)
GATTCTCTGTGATTGGACTCCTTAC
LOC_Os07g29780
Os.36953.1.S1_at--1133--8811Chr07:17504329..17504353 (25 bp)
TGATTGGACTCCTTACTTCACTGCA
LOC_Os07g29780
Os.36953.1.S1_at--127--5731Chr07:17504323..17504347 (25 bp)
GACTCCTTACTTCACTGCAGTGGCG
LOC_Os07g29780
Os.36953.1.S1_at--265--3851Chr07:17504309..17504333 (25 bp)
CTGCAGTGGCGTGTGGAATTTTAGT
LOC_Os07g29780
Os.36953.1.S1_at--893--2491Chr07:17504273..17504297 (25 bp)
AACAGTGTGTTCACTGCAGTGGCGT
LOC_Os07g29780
Os.36953.1.S1_at--489--5011Chr07:17504258..17504282 (25 bp)
GCAGTGGCGTGTGCAATGCTAGTTT
LOC_Os07g29780
Os.36953.1.S1_at--54--6211Chr07:17504225..17504249 (25 bp)
GAGGCAGTGTGTGTAATTGGATTTA
LOC_Os07g29780
Os.36953.1.S1_at--589--31Chr07:17504210..17504234 (25 bp)
ATTGGATTTATGACTGCTTCATCAT
LOC_Os07g29780
Os.36953.1.S1_at--838--5712Chr02:4987970..4987997 (23 bp)
GACTGCTTCATCATATATGCAGATT
NONE
Os.36953.1.S1_at--1054--631NONE
ATGCAGATTTTATGTGGATGTGAAG
NONE
Target Sequence 
CTTTTGTAATATAGGATTCTCTGTGATTGGACTCCTTACTTCACTGCAGTGGCGTGTGGAATTTTAGTTTTGGATATGCA
ACAGTGTGTTCACTGCAGTGGCGTGTGCAATGCTAGTTTTTTTATATGAGGCAGTGTGTGTAATTGGATTTATGACTGCT
TCATCATATATGCAGATTTTATGTGGATGTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis