Browse Element(s) Details


Os.36969.1.S1_at

Description gb:AK120328.1
DB_XREF= gi:37989951
TID=Os.36969.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-045-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013058D11, full insert sequence.
FL= gb:AK120328.1 gb:AK062143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g028804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g02830OsAffx.13628.1.S1_s_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02830OsAffx.13628.1.S1_at11/114+1087317..1089317Peptidyl-prolyl cis-trans isomerase 1, putative, expressed
LOC_Os04g02840Os.45173.1.S1_x_at6/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02840OsAffx.20877.1.S1_at1/114+1091523..1094759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g02850OsAffx.13629.1.S1_at11/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02850OsAffx.13326.1.S1_at1/114+1097963..1100386pentatricopeptide, putative, expressed
LOC_Os04g02860Os.38425.1.S1_at11/114+1100505..1105865NB-ARC domain containing protein, expressed
LOC_Os04g02870Os.18127.1.A1_at10/114+1107699..1112090Arginine/serine-rich splicing factor RSP41, putative, expressed
LOC_Os04g02880Os.36969.1.S1_at4/114+1113164..1113561expressed protein
LOC_Os04g02890Os.27457.1.S1_at11/114+1115814..1121887expressed protein
LOC_Os04g02890Os.27807.2.S1_a_at11/114+1115814..1121887expressed protein
LOC_Os04g02900Os.15076.1.S1_at11/114+1122969..1126811Pyruvate dehydrogenase E1 component alpha subunit, putative, expressed
LOC_Os04g02910Os.11963.1.S2_at11/114+1135888..1139302membrane related protein CP5, putative, expressed
LOC_Os04g02910Os.11963.1.S1_at11/114+1135888..1139302membrane related protein CP5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36969.1.S1_at--510--2371Chr04:1113159..1113183 (25 bp)
AAACCATGGCTTCTGCAGATGCTAT
NONE
Os.36969.1.S1_at--586--1291Chr04:1113175..1113199 (25 bp)
AGATGCTATCCTGTCTTCGCAGGTG
LOC_Os04g02880
Os.36969.1.S1_at--354--5491Chr04:1113435..1113459 (25 bp)
GAACATCAGCGGTGCACCTGTAGCT
LOC_Os04g02880
Os.36969.1.S1_at--350--2871Chr04:1113491..1113515 (25 bp)
AAGTGATGAAGCCACGGTTTGCCGT
LOC_Os04g02880
Os.36969.1.S1_at--748--8311Chr04:1113527..1113551 (25 bp)
GGCTCAACTGCTTCGAGACACTTGT
LOC_Os04g02880
Os.36969.1.S1_at--945--1411Chr04:1113542..1113566 (25 bp)
AGACACTTGTCCCTCGCTGATGATA
NONE
Os.36969.1.S1_at--236--671Chr04:1113569..1113593 (25 bp)
ATGAAGCGCACACACGAGCTGCTAG
NONE
Os.36969.1.S1_at--281--1611Chr04:1113585..1113609 (25 bp)
AGCTGCTAGCTGTGTTCCATCTGAT
NONE
Os.36969.1.S1_at--645--10111Chr04:1113667..1113691 (25 bp)
TATGAGTTGGATCCTTTCGCACGCG
NONE
Os.36969.1.S1_at--461--9351Chr04:1113683..1113707 (25 bp)
TCGCACGCGCGATTATGTATTTTCT
NONE
Os.36969.1.S1_at--54--9091Chr04:1113732..1113756 (25 bp)
TGCTCTTACGAGTGATTCCGACTGT
NONE
Target Sequence 
AAACCATGGCTTCTGCAGATGCTATCCTGTCTTCGCAGGTGGCCGGTGAATGCCTGAAGATCAACAAGCTGGCAGCAGCA
AGCCCAGTGAAAGTAGTGCAGGTGCAGAAGCCGAGCAAAGAGACGAAGAACATCAGCGGTGCACCTGTAGCTGCCGCTGC
CGTCAGGGTGGTTGTGAGCAAGCAAGTGATGAAGCCACGGTTTGCCGTGGAGCTGGATGGGCTCAACTGCTTCGAGACAC
TTGTCCCTCGCTGATGATATCATGAAGCGCACACACGAGCTGCTAGCTGTGTTCCATCTGATTTGTTGATTTTCTGGTCA
TTATTTTTGCGGGGTTATATTATATTTGTTCAAATTTTCTATGAGTTGGATCCTTTCGCACGCGCGATTATGTATTTTCT
TTCTTTGAAGTGATATGTGTAATTTGCTCTTACGAGTGATTCCGACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis