Browse Element(s) Details


Os.3697.1.S1_at

Description gb:AK104612.1
DB_XREF= gi:32989821
TID=Os.3697.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D05, full insert sequence.
FL= gb:AK104612.1 gb:AK104422.1 gb:AK069439.1 gb:AK061381.1 gb:AK103951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0221011/11Bark storage protein A precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02160Os.35821.1.S1_at7/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02160Os.33192.1.S1_at1/116+646480..655657AMP-binding enzyme family protein, expressed
LOC_Os06g02170Os.16379.1.S1_at11/116+656278..658069expressed protein
LOC_Os06g02180Os.25614.1.S1_at11/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02180Os.57510.1.S1_x_at1/116+659149..664392cellulose synthase-like protein D4, putative, expressed
LOC_Os06g02190OsAffx.15230.1.S1_at11/116+668561..668830hypothetical protein
LOC_Os06g02200Os.32653.1.S1_at11/116+675127..677879pentatricopeptide, putative, expressed
LOC_Os06g02210Os.3697.1.S1_at11/116+677899..681798Bark storage protein A precursor, putative, expressed
LOC_Os06g02220Os.3700.1.S1_at11/116+691775..694749Ripening-related protein, putative, expressed
LOC_Os06g02230Os.20309.1.S1_at11/116+695035..697257B3 DNA binding domain containing protein, expressed
LOC_Os06g02240Os.3702.1.S1_at10/116+698091..701212RNA recognition motif, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009116biological_processnucleoside metabolism
GO:0003824molecular_functioncatalytic activity
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3697.1.S1_at--24--751Chr06:678601..678625 (25 bp)
ATGTAACGACACTTTCTGCTTGCCA
LOC_Os06g02210
Os.3697.1.S1_at--545--4911Chr06:678584..678608 (25 bp)
GCTTGCCAACAACTCCAAAAGTAGT
LOC_Os06g02210
Os.3697.1.S1_at--183--7971Chr06:678546..678570 (25 bp)
GGATCGTCAGCTGATATGTTTCTAG
LOC_Os06g02210
Os.3697.1.S1_at--603--7391Chr06:678317..678471 (25 bp)
GTGATGACAACAACATCTCCTGGCA
LOC_Os06g02210
Os.3697.1.S1_at--519--471Chr06:678303..678327 (25 bp)
ATCTCCTGGCATACCTGTGATTGTA
LOC_Os06g02210
Os.3697.1.S1_at--767--811Chr06:678240..678264 (25 bp)
ATGGTCGTCAACAAGCCTGATGAAC
LOC_Os06g02210
Os.3697.1.S1_at--993--7971Chr06:678183..678207 (25 bp)
GGAGTTTATTGCTACAGTCGGGAAA
LOC_Os06g02210
Os.3697.1.S1_at--614--9231Chr06:678104..678128 (25 bp)
TCCATGCTGATCCAATAATGCCCTG
LOC_Os06g02210
Os.3697.1.S1_at--265--1291Chr06:678043..678067 (25 bp)
AGATGCTTTCCTGAGCTTCAAGTGC
LOC_Os06g02210
Os.3697.1.S1_at--104--7331Chr06:678022..678046 (25 bp)
GTGCATGTCCTCTCCCATAAAGGAT
LOC_Os06g02210
Os.3697.1.S1_at--609--7051Chr06:677968..677992 (25 bp)
GTAAGCATGCATGTGCGATCATTTT
LOC_Os06g02210
Target Sequence 
ATGTAACGACACTTTCTGCTTGCCAACAACTCCAAAAGTAGTCTGTGGGCTAAAAGGATCGTCAGCTGATATGTTTCTAG
ACAATGCAGAATATAGGAAGTTCCTTTTCAGAGAATTTGGTGTATCAACAGTAGATGAGGAGAGTGCAGCAGTGGTGATG
ACAACAACATCTCCTGGCATACCTGTGATTGTATTCCGGGGAGTTTCTGATTTGGCTGGAGGGGAGCCAACATGGTCGTC
AACAAGCCTGATGAACCTGGCATCTATTAATGCACTCAAAGTGGCAGTGGAGTTTATTGCTACAGTCGGGAAACAGAAGT
CAACAATGTCAGCAGGAAGTGCTAATAACTGAAGGAAAAAGATCACATCCATGCTGATCCAATAATGCCCTGGAATAACA
TTTTACAGCAGTAGCTGCATTCAGAATAAGATGCTTTCCTGAGCTTCAAGTGCATGTCCTCTCCCATAAAGGATATTAGT
GTTGAATTATTTTGTTGAAACTTGTAAGCATGCATGTGCGATCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis