Browse Element(s) Details


Os.37141.1.S1_at

Description gb:AK060507.1
DB_XREF= gi:32970525
TID=Os.37141.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) anthocyanin 5-aromatic acyltransferase-like protein~contains EST AU063315(C60674) (OSJNBa0077F02.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A03, full insert sequence.
FL= gb:AK060507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2315011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23110Os.31900.1.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_x_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23110Os.31900.2.S1_at10/117+13024746..13035421Poly synthetase 1, putative, expressed
LOC_Os07g23120Os.32488.1.S1_at11/117+13035830..13036946expressed protein
LOC_Os07g23130OsAffx.16373.1.S1_at11/117+13039086..13040891hypothetical protein
LOC_Os07g23140OsAffx.22169.1.S1_at11/117+13047554..13047793hypothetical protein
LOC_Os07g23150Os.37141.1.S1_at11/117+13051277..13053598Transferase family protein, expressed
LOC_Os07g23169Os.35362.1.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169Os.41695.15.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_s_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16375.2.S1_at11/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.16376.1.S1_at9/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.27699.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23169OsAffx.5264.1.S1_at1/117+13056164..13066591expressed protein
LOC_Os07g23190OsAffx.16377.1.S1_x_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23190OsAffx.16377.1.S1_at11/117+13070614..13071786lysine ketoglutarate reductase trans-splicing related 1, putative
LOC_Os07g23200Os.15319.1.S1_at10/117+13072746..13076810F-actin capping protein alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37141.1.S1_at--1081--10611Chr07:13053005..13053029 (25 bp)
TTCGGGTTCGTGACCGGGTGCAAGC
LOC_Os07g23150
Os.37141.1.S1_at--812--8911Chr07:13053036..13053060 (25 bp)
TGAGCCCGCCGATACCGTCGAGCTA
LOC_Os07g23150
Os.37141.1.S1_at--401--311Chr07:13053047..13053071 (25 bp)
ATACCGTCGAGCTACTTCGGCAACT
LOC_Os07g23150
Os.37141.1.S1_at--35--7671Chr07:13053247..13053271 (25 bp)
GGGTTCACCGAAGCTGGGCGTGTAC
LOC_Os07g23150
Os.37141.1.S1_at--532--7791Chr07:13053302..13053326 (25 bp)
GGTCGGCCCCGGAAGGTGGAGATAG
LOC_Os07g23150
Os.37141.1.S1_at--448--1611Chr07:13053459..13053483 (25 bp)
AGCTGGTCCGGCTGCTAGACGCCAC
LOC_Os07g23150
Os.37141.1.S1_at--953--5791Chr07:13053476..13053500 (25 bp)
GACGCCACTACCCACTAGTGCTGAG
LOC_Os07g23150
Os.37141.1.S1_at--849--1811Chr07:13053485..13053509 (25 bp)
ACCCACTAGTGCTGAGTGGTGACGC
LOC_Os07g23150
Os.37141.1.S1_at--1006--151Chr07:13053547..13053571 (25 bp)
ATTATTCCCTCTGCTTCGGTGTTTC
LOC_Os07g23150
Os.37141.1.S1_at--359--7431Chr07:13053565..13053589 (25 bp)
GTGTTTCTGGAACTGGGACCAGTCC
LOC_Os07g23150
Os.37141.1.S1_at--817--5431Chr07:13053574..13053598 (25 bp)
GAACTGGGACCAGTCCTTTGCCTTC
LOC_Os07g23150
Target Sequence 
TTCGGGTTCGTGACCGGGTGCAAGCCCCNGCGTGAGCCCGCCGATACCGTCGAGCTACTTCGGCAACTGCCTGGGGCTGT
GCTTCGTGGAGGCCAAGCGGAGACACCTCACCGCGGCCAGCGCATCGGCGGNCATCTGGCGCGTGATCGCGGGGCTCGCC
GAGCAGGGGNGGNCGCTNCGTGACGCCCACGGCTGGNTGCGCGGCGCGCGGNAGTACGCGGCGGCGCGCGCGNTGACGGT
GGCGGGTTCACCGAAGCTGGGCGTGTACGCGGCGGCGGATCTCGGCGCGACGTGGGGGGGTCGGCCCCGGAAGGTGGAGA
TAGCGTCGGTGGAGCGGACGGGCGCGCTGGCGCTGGCGGAGAGCGGCCGCCGTGGCGACCGGGACGGCGGCGGCATCGAG
GTCGGGGTGGCGCTGCCGCGCGCGGAGATGGAGGCGTTCCGCGCGTTCCACGTCGAGCTGGTCCGGCTGCTAGACGCCAC
TACCCACTAGTGCTGAGTGGTGACGCGGCCTCCCCCTTGCCGCCAGTGTAAAAAAATCGTGCCATTATTCCCTCTGCTTC
GGTGTTTCTGGAACTGGGACCAGTCCTTTGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis