Browse Element(s) Details


Os.37276.1.S1_at

Description gb:AK059646.1
DB_XREF= gi:32969664
TID=Os.37276.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37276 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-031-C02, full insert sequence.
FL= gb:AK059646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1199011/11BolA-like protein, expressed
LOC_Os02g424002/11BolA like protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11940OsAffx.12831.1.S1_at11/113+6237448..6240521hypothetical protein
LOC_Os03g11950Os.54950.1.S1_at11/113+6243885..6246971CRAL/TRIO domain containing protein, expressed
LOC_Os03g11960Os.4727.1.S1_at11/113+6251070..6254484Superoxide dismutase 2, putative, expressed
LOC_Os03g11970Os.12320.1.S1_at11/113+6254912..6258578Tubulin alpha-2 chain, putative, expressed
LOC_Os03g11980Os.7435.1.S1_at11/113+6259389..6261827Glycosyl hydrolase family 20, catalytic domain containing protein, expressed
LOC_Os03g11990Os.37276.1.S1_at11/113+6261981..6263463BolA-like protein, expressed
LOC_Os03g12000Os.7282.1.S1_at10/113+6265128..6267536DEAD/DEAH box helicase family protein, putative, expressed
LOC_Os03g12010Os.49367.1.S1_a_at11/113+6269847..6274353expressed protein
LOC_Os03g12010Os.49367.2.S1_x_at11/113+6269847..6274353expressed protein
LOC_Os03g12020Os.27826.1.S1_at11/113+6274595..627672050S ribosomal protein L15, chloroplast precursor, putative, expressed
LOC_Os03g12030Os.9724.1.S1_at11/113+6281907..6283964very-long-chain fatty acid condensing enzyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37276.1.S1_at--119--891Chr03:6262950..6262974 (25 bp)
AGGCCAGTGCGCTAGATATTGAAGA
LOC_Os03g11990
Os.37276.1.S1_at--947--6831Chr03:6262976..6263000 (25 bp)
GTTTCTTACCAACATGCTGGGCATG
LOC_Os03g11990
Os.37276.1.S1_at--12--8632Chr03:6263094..6263118 (25 bp)
TGGTGTATGACCTCTTGACTGATGA
LOC_Os03g11990
Os.37276.1.S1_at--584--2012Chr03:6263124..6263148 (25 bp)
ACTCAGGACTTCATGCTATCTCAAT
LOC_Os03g11990
Os.37276.1.S1_at--693--3151Chr03:6263146..6263170 (25 bp)
AATTGTTGCAAAAACTCCCAAGGAG
LOC_Os03g11990
Os.37276.1.S1_at--384--2531Chr03:6263158..6263182 (25 bp)
AACTCCCAAGGAGTCAGGATCCTAA
LOC_Os03g11990
Os.37276.1.S1_at--152--271Chr03:6263204..6263228 (25 bp)
ATATGCTTGATTACTTGTCTTGAAA
LOC_Os03g11990
Os.37276.1.S1_at--45--6791Chr03:6263282..6263306 (25 bp)
GTTATGGACGCTTATGTTTTCACTA
LOC_Os03g11990
Os.37276.1.S1_at--494--2291Chr03:6263307..6263331 (25 bp)
AAATGCAGTGCACAACTTCTGTTGT
LOC_Os03g11990
Os.37276.1.S1_at--358--3871Chr03:6263325..6263349 (25 bp)
CTGTTGTCAGTGAACATCTGTGCTC
LOC_Os03g11990
Os.37276.1.S1_at--789--6511Chr03:6263386..6263410 (25 bp)
GATATATCTGTTTACTATTCGATCA
LOC_Os03g11990
Target Sequence 
AGGCCAGTGCGCTAGATATTGAAGATGTTTCTTACCAACATGCTGGGCATGCAGCTGTCAAGGACAATGCAAATGAGACA
CATTTTAACATCAGGGTAATTTCGCCTAAGTTTGAGGGCCAGAGCCTTGTGAAGCGTCACAGGATGGTGTATGACCTCTT
GACTGATGAGTTGAACTCAGGACTTCATGCTATCTCAATTGTTGCAAAAACTCCCAAGGAGTCAGGATCCTAAATGTCAA
AAATGTAAGGACTTATATGCTTGATTACTTGTCTTGAAATAAGTTGATTGCAGCAATATTGTGTAACCATAAGTCAATTT
TTTCAAAACAATGTTATGGACGCTTATGTTTTCACTAAAATGCAGTGCACAACTTCTGTTGTCAGTGAACATCTGTGCTC
ATGAAAATTTGTGGAAAACATAGTGAGTATCGAATTGATATATCTGTTTACTATTCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis