Browse Element(s) Details


Os.37326.1.S1_at

Description gb:AK059241.1
DB_XREF= gi:32969259
TID=Os.37326.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37326 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E07.26 (P0439E07.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F09, full insert sequence.
FL= gb:AK059241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5409011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed
LOC_Os01g54140OsAffx.21632.1.S1_at11/111+31461100..31463986hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37326.1.S1_at--572--3031Chr01:31436129..31436153 (25 bp)
AATCCATCGCCGGAGCTGACACAAA
LOC_Os01g54090
Os.37326.1.S1_at--965--3531Chr01:31436238..31436262 (25 bp)
CATCCTGAGGATGCTGGTCCGGAGC
LOC_Os01g54090
Os.37326.1.S1_at--41--4731Chr01:31436336..31436360 (25 bp)
GCTGGTCCAGATTCAGGCCCATGGA
LOC_Os01g54090
Os.37326.1.S1_at--355--931Chr01:31436621..31436645 (25 bp)
AGGCATGCAACGGTGGGCTCTACAA
LOC_Os01g54090
Os.37326.1.S1_at--1004--8411Chr01:31436652..31436676 (25 bp)
GGCCGGGAAGCCAGCGTACAGCAAT
LOC_Os01g54090
Os.37326.1.S1_at--626--7031Chr01:31436667..31436691 (25 bp)
GTACAGCAATGACGACCTCCGAGGA
LOC_Os01g54090
Os.37326.1.S1_at--121--4691Chr01:31436719..31436743 (25 bp)
GCGGAGTTGTTCTACTGCTTCCCTT
LOC_Os01g54090
Os.37326.1.S1_at--155--2811Chr01:31436797..31436821 (25 bp)
AAGATCATCCCGTTGAACCTGCAGT
LOC_Os01g54090
Os.37326.1.S1_at--604--3831Chr01:31436831..31436855 (25 bp)
CTGCTTGCCTTGTGCTTGGATACCA
LOC_Os01g54090
Os.37326.1.S1_at--523--8571Chr01:31436847..31436871 (25 bp)
TGGATACCACTTTCTCCTGTCAAGC
LOC_Os01g54090
Os.37326.1.S1_at--397--1551Chr01:31436869..31436893 (25 bp)
AGCTTGCATTCGACTTGGTTGTTGT
LOC_Os01g54090
Target Sequence 
AATCCATCGCCGGAGCTGACACAAACGGCTCGCTCCTCTGCATCCGCAAGCACCGCCGCAGGCAAGACGACCGCAGCGGC
GGCGCCTCTGGCCCGATCCGCCACGACGACATCCTGAGGATGCTGGTCCGGAGCTCGCGGTGCTCGCGGGCCCTCGCCCT
CCACCTCTGCCCCGGCGCCTCGGCGTTCCACATCTTCTCCCGGCGAGGCTGGTCCAGATTCAGGCCCATGGACGGCGCCG
TCGTCGTCACCGTCGGCGACCAGCTCCAGGCATGCAACGGTGGGCTCTACAAGAGCGTGGCCGGGAAGCCAGCGTACAGC
AATGACGACCTCCGAGGAAACGGCGGCGACACCGGTGTCGCCTCCGCGGAGTTGTTCTACTGCTTCCCTTCGGCCGGCAC
GGCGGCTGGCAAGGCGAGCGAGGTGTTGAGCGCGGATGCCGGCAAGATCATCCCGTTGAACCTGCAGTTCATGGTGGCTG
CTTGCCTTGTGCTTGGATACCACTTTCTCCTGTCAAGCTTGCATTCGACTTGGTTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37326.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis