Browse Element(s) Details


Os.37365.1.S3_at

Description gb:AK121865.1
DB_XREF= gi:37991488
TID=Os.37365.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37365 (NCBI UniGene Cluster)
UG_TITLE=Small nucleolar RNA gene ClusterVI
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033103F15, full insert sequence.
FL= gb:AK121865.1 gb:AK072476.1 gb:AK058970.1 gb:AK066333.1 gb:AK059426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4351911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43460OsAffx.12476.1.S1_at11/112+26227039..26232421Helicase conserved C-terminal domain containing protein
LOC_Os02g43470Os.8131.1.S1_at11/112+26234257..26237113Glutamate dehydrogenase A, putative, expressed
LOC_Os02g43480Os.25217.1.S1_at11/112+26237799..26240283expressed protein
LOC_Os02g43490OsAffx.24701.1.S1_at9/112+26240930..26242296hypothetical protein
LOC_Os02g43490OsAffx.13010.1.S1_x_at1/112+26240930..26242296hypothetical protein
LOC_Os02g43500Os.14058.1.S1_at11/112+26242755..26246139chaperone protein dnaJ, putative, expressed
LOC_Os02g43510OsAffx.12477.1.A1_at2/112+26247149..26247875hypothetical protein
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed
LOC_Os02g43560OsAffx.24704.1.S1_s_at11/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43560Os.53486.1.S1_at10/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43570OsAffx.24705.1.S1_at11/112+26284282..26284741hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37365.1.S3_at--778--2831Chr02:26259231..26259255 (25 bp)
AAGTGAGCTGTTGATGGACGCCTAA
LOC_Os02g43519
Os.37365.1.S3_at--185--3451Chr02:26259283..26259307 (25 bp)
CAGTTACTGCCTAATAGCTTTCGCC
LOC_Os02g43519
Os.37365.1.S3_at--1038--2251Chr02:26259335..26259359 (25 bp)
AAATCCTTCGTTGAATGCATACCCA
LOC_Os02g43519
Os.37365.1.S3_at--175--651Chr02:26259349..26259373 (25 bp)
ATGCATACCCAAGCTCACTATTTTG
LOC_Os02g43519
Os.37365.1.S3_at--24--5551Chr02:26259435..26259459 (25 bp)
GAAACTTGTCTGTTCGAGTTGTGAA
LOC_Os02g43519
Os.37365.1.S3_at--596--10211Chr02:26259490..26259514 (25 bp)
TATTCCACAAGATCCAGCTATTGAG
LOC_Os02g43519
Os.37365.1.S3_at--632--5611Chr02:26259553..26259577 (25 bp)
GACAAGAACACTTCCAACCTGTAAA
LOC_Os02g43519
Os.37365.1.S3_at--579--251Chr02:26259643..26259667 (25 bp)
ATATCCGTTGTGATTTTTGCATAAC
LOC_Os02g43519
Os.37365.1.S3_at--903--10731Chr02:26259697..26259721 (25 bp)
TTGCATTGTCATACTGTGAGGGTCT
LOC_Os02g43519
Os.37365.1.S3_at--731--6131Chr02:26259714..26259738 (25 bp)
GAGGGTCTGTAGTATTTTGTCTTTA
LOC_Os02g43519
Os.37365.1.S3_at--789--1151Chr02:26259745..26259769 (25 bp)
AGTCTGTTCCTCTACTATGTTTCTA
LOC_Os02g43519
Target Sequence 
AAGTGAGCTGTTGATGGACGCCTAATGATGCTAAAATTTCTCATAGCATCTGCAGTTACTGCCTAATAGCTTTCGCCCTG
CCAGGCTTGAGAGCTAGTGCTGTTAAATCCTTCGTTGAATGCATACCCAAGCTCACTATTTTGATCAACCTGTGTTTTTA
ATAAATATAAATTCTAAAAGTTCGATGAAATGTTGATTTCATGTGAAACTTGTCTGTTCGAGTTGTGAATTCAGCTATTG
AGACAGTGAAAAGAGCAGTTATTCCACAAGATCCAGCTATTGAGACAGTGAAAAGAGCAGTTATTCCACAAGATCAGAAC
TAGACAAGAACACTTCCAACCTGTAAAATCTTATTNTGTACTATTGGCTGTAATGACAATATGCGNACTATGAGATGTAT
TTGTAGTATGCAATATCCGTTGTGATTTTTGCATAACAAGCAGCTGATTATATTTTATTATTCATCTTGCATTGTCATAC
TGTGAGGGTCTGTAGTATTTTGTCTTTATTTAACAGTCTGTTCCTCTACTATGTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37365.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis