Browse Element(s) Details


Os.37429.1.S1_at

Description gb:AK058596.1
DB_XREF= gi:32968614
TID=Os.37429.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37429 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0674H09.16 (P0674H09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-H03, full insert sequence.
FL= gb:AK058596.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6721010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67134Os.9738.1.S1_at11/111+39295133..3930328560S ribosomal protein L5-1, putative, expressed
LOC_Os01g67150OsAffx.11768.2.S1_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_s_at11/111+39304460..39307080hypothetical protein
LOC_Os01g67150OsAffx.11768.1.S1_at2/111+39304460..39307080hypothetical protein
LOC_Os01g67160Os.12638.1.S1_at11/111+39308151..39311021Cell division control protein 2 homolog C, putative, expressed
LOC_Os01g67170Os.15584.1.S1_at11/111+39313528..39317337expressed protein
LOC_Os01g67180Os.10377.1.S1_at9/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67180Os.55134.1.S1_at1/111+39317818..39320652Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.2.S1_x_at11/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67190Os.8919.1.S1_at10/111+39321325..39324319Ribonuclease T2 family protein, expressed
LOC_Os01g67200NANA1+39325126..39326849ribosomal protein L13 family protein, putative
LOC_Os01g67210Os.37429.1.S1_at10/111+39327531..39329591pentatricopeptide, putative, expressed
LOC_Os01g67220Os.18285.1.S1_at11/111+39331855..39337475Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g67229NANA1+39338346..39338807NA
LOC_Os01g67240Os.38100.1.S1_at11/111+39340675..39344644Formin Homology 2 Domain containing protein, expressed
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37429.1.S1_at--965--5011Chr01:39329016..39329040 (25 bp)
GCAGGGTTACATATCACACACTTAT
LOC_Os01g67210
Os.37429.1.S1_at--303--3311Chr01:39329032..39329056 (25 bp)
CACACTTATTCGTGGTTACTGCAAG
LOC_Os01g67210
Os.37429.1.S1_at--169--1171Chr01:39329148..39329172 (25 bp)
AGTCACTTTGTCTCAAGGCTTTGGA
LOC_Os01g67210
Os.37429.1.S1_at--317--911Chr01:39329163..39329187 (25 bp)
AGGCTTTGGACTGGAGAACTGCTGA
LOC_Os01g67210
Os.37429.1.S1_at--18--8251Chr01:39329231..39329255 (25 bp)
GGCACTACTCGAAGCCTTATAGCAG
LOC_Os01g67210
Os.37429.1.S1_at--428--1211Chr01:39329307..39329331 (25 bp)
AGTTTCTTTTTGGTACGCTTGCAGT
LOC_Os01g67210
Os.37429.1.S1_at--366--1111Chr01:39329329..39329353 (25 bp)
AGTGACACAGCTGCCAATCAATTTT
LOC_Os01g67210
Os.37429.1.S1_at--1102--7591Chr01:39329355..39329379 (25 bp)
GGGCAGTGCTTTCTTTTGCTCTCTG
LOC_Os01g67210
Os.37429.1.S1_at--760--2391Chr01:39329401..39329425 (25 bp)
AAACATCAGCTTTTGTACTTGTGTC
LOC_Os01g67210
Os.37429.1.S1_at--1027--7791Chr01:39329501..39329525 (25 bp)
GGTCTAGAATTCCTACTTCTTTAGA
LOC_Os01g67210
Os.37429.1.S1_at--735--10671NONE
TTCCATATGGTCTCATGCCTTGCAA
NONE
Target Sequence 
GCAGGGTTACATATCACACACTTATTCGTGGTTACTGCAAGATGGAGGAGTTTGAGAAGGCCTTGGAGTGCCTAAAGGAG
ATGAAGGAAGATGGGATGGAGCCAAATATGGATGAGTACAACAAACTTNTCCAGTCACTTTGTCTCAAGGCTTTGGACTG
GAGAACTGCTGAGAATCTCCTGAAGGAAATGGAGGATGGTGGATTATGCCTTAAAGGCACTACTCGAAGCCTTATAGCAG
CAGTCAAGGAATTGGAAATGGATGAGCTGTCAAAAGCCAGCCAAGAAGCATAGTTTCTTTTTGGTACGCTTGCAGTGACA
CAGCTGCCAATCAATTTTGGGGCAGTGCTTTCTTTTGCTCTCTGCTTCTCTGGTGAGCTTGTGAGAAACATCAGCTTTTG
TACTTGTGTCTGTTTGTTGTTAGATGCTACAATAATCTTGCAATTATATTGTAAGTGCTAGACTGACAGGAAGAGATTTA
ATTTTGGTCTAGAATTCCTACTTCTTTAGAACTGAGAGAATTCCATATTTTATTTTCCATATGGTCTCATGCCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis