Browse Element(s) Details


Os.37523.1.S1_at

Description gb:AK063054.1
DB_XREF= gi:32973072
TID=Os.37523.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F02, full insert sequence.
FL= gb:AK063054.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4961011/11H/ACA ribonucleoprotein complex subunit 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g49570Os.14793.1.S1_at11/112+30291340..30300270Peptidase family U7 containing protein, expressed
LOC_Os02g49580NANA2+30302974..30303525expressed protein
LOC_Os02g49590OsAffx.3013.1.S1_at11/112+30304672..30307240ASC1-like protein 2, putative, expressed
LOC_Os02g49600Os.53695.1.S1_at11/112+30310272..30313936Leucine Rich Repeat family protein, expressed
LOC_Os02g49610Os.37523.1.S1_at11/112+30317371..30319797H/ACA ribonucleoprotein complex subunit 2, putative, expressed
LOC_Os02g49620Os.24692.1.A1_at11/112+30319915..30323596expressed protein
LOC_Os02g49630OsAffx.3014.1.S1_at11/112+30324133..30326791Tetraspanin family protein, expressed
LOC_Os02g49640Os.48262.1.A1_at1/112+30330462..30332974expressed protein
LOC_Os02g49650Os.19315.1.S1_s_at3/112+30334375..30338575hypothetical protein
LOC_Os02g49660OsAffx.12567.1.S1_at11/112+30340594..30341924expressed protein
LOC_Os02g49660OsAffx.12567.1.S1_x_at11/112+30340594..30341924expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37523.1.S1_at--247--9731Chr02:30319429..30319453 (25 bp)
TCAAGAGCATCCGTCGTGGGAACAA
LOC_Os02g49610
Os.37523.1.S1_at--654--7611Chr02:30318727..30318751 (25 bp)
GGGAATATTTCTCCTATCGATGTGA
LOC_Os02g49610
Os.37523.1.S1_at--50--2791Chr02:30317885..30317906 (22 bp)
AAGAGGATCTTGCTACTGCCGGGAC
LOC_Os02g49610
Os.37523.1.S1_at--481--1771Chr02:30317847..30317871 (25 bp)
ACCTGTTGCGTCCTGGTTATGACCA
LOC_Os02g49610
Os.37523.1.S1_at--579--1851Chr02:30317768..30317792 (25 bp)
ACGACCATGTTGTAGCTGAAGTTGC
LOC_Os02g49610
Os.37523.1.S1_at--309--2991Chr02:30317728..30317752 (25 bp)
AATGTTCTGAGTACAACGCCCAGCC
LOC_Os02g49610
Os.37523.1.S1_at--237--6471Chr02:30317682..30317706 (25 bp)
GATAGAAACCCAGGCACCATGGCTG
LOC_Os02g49610
Os.37523.1.S1_at--931--851Chr02:30317664..30317688 (25 bp)
ATGGCTGCTCACATCTTTCTATATG
LOC_Os02g49610
Os.37523.1.S1_at--629--991Chr02:30317623..30317647 (25 bp)
AGGTTGCTCTACTAGTTTACCCCTG
LOC_Os02g49610
Os.37523.1.S1_at--46--8731Chr02:30317600..30317624 (25 bp)
TGTCGGATCATGCTGTTTCTCTGTT
LOC_Os02g49610
Os.37523.1.S1_at--1143--7371Chr02:30317540..30317564 (25 bp)
GTGAGCTGATCATTTACTCTCCAGT
LOC_Os02g49610
Target Sequence 
TCAAGAGCATCCGTCGTGGGAACAAAGGGTTGTGTGTAATTGCTGGGAATATTTCTCCTATCGATGTGATTACACATGTT
CCAATACTTTGTGAGGAAGCTAATATTCCTTACATATATGTGCCATCAAAAGAGGATCTTGCTACTGCCGGGACTACTAA
GAGGCCTACCTGTTGCGTCCTGGTTATGACCAAGCCTGCCAAGGGGGAGATCAATGAAGAGGTGAAGGAGAAACTGAAGT
CAGACTACGACCATGTTGTAGCTGAAGTTGCAGAGGTTACATCTTCAATGTTCTGAGTACAACGCCCAGCCCCAGGGCCA
TAGTAAATTAGTGATAGAAACCCAGGCACCATGGCTGCTCACATCTTTCTATATGTATTATGTGAACATGAAGGTTGCTC
TACTAGTTTACCCCTGTCGGATCATGCTGTTTCTCTGTTGATTAGCATAAGCTAGTCAATTGTAATGAAACCTGGTGAGC
TGATCATTTACTCTCCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis