Browse Element(s) Details


Os.37611.2.S1_x_at

Description gb:CR282531
DB_XREF= gi:44669097
DB_XREF=CR282531
CLONE=y628d09p5
TID=Os.37611.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 60S acidic ribosomal protein P2A (P0710E05.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g095107/1160S acidic ribosomal protein P2A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09470Os.42877.1.S1_at11/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09470OsAffx.26803.1.S1_x_at2/111+4823392..4825535IQ calmodulin-binding motif family protein, expressed
LOC_Os01g09480OsAffx.23170.1.S1_at11/111+4833806..4835017hypothetical protein
LOC_Os01g09490Os.35344.3.S1_x_at11/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490Os.35344.18.S1_x_at9/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09490OsAffx.22940.5.S1_x_at3/111+4837156..4842141transposon protein, putative, Mutator sub-class
LOC_Os01g09500NANA1+4846703..4848995expressed protein
LOC_Os01g09510Os.37611.1.S1_at11/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09510Os.37611.2.S1_x_at7/111+4849232..485124660S acidic ribosomal protein P2A, putative, expressed
LOC_Os01g09520NANA1+4853889..4860240transposon protein, putative, unclassified, expressed
LOC_Os01g09530NANA1+4860680..4863917transposon protein, putative, unclassified
LOC_Os01g09540Os.1475.1.S1_at11/111+4868944..4870608plant acid phosphatase family protein, expressed
LOC_Os01g09550Os.27469.2.S1_at11/111+4876017..4882642No apical meristem protein, expressed
LOC_Os01g09550Os.27469.1.S1_a_at11/111+4876017..4882642No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37611.2.S1_x_at--437--831Chr01:4850483..4850507 (25 bp)
ATGGAACTCCTGTTGTCTCAAGTGA
LOC_Os01g09510
Os.37611.2.S1_x_at--139--2931Chr01:4850513..4850537 (25 bp)
AAGGACATCACTGAGCTCATCGCTT
LOC_Os01g09510
Os.37611.2.S1_x_at--891--5331Chr01:4850548..4850572 (25 bp)
GAAGTTTGCTTCAGTTCCATCTGGT
LOC_Os01g09510
Os.37611.2.S1_x_at--940--9091Chr01:4850626..4850650 (25 bp)
TGCTCCTGCAGCTGAGGCGAAGAAA
LOC_Os01g09510
Os.37611.2.S1_x_at--1028--10751Chr01:4850924..4850948 (25 bp)
TTGACTGAGTGATGCGGTCACCTCT
LOC_Os01g09510
Os.37611.2.S1_x_at--1034--9671Chr01:4850941..4850965 (25 bp)
TCACCTCTTCTATCATCAATACCAG
LOC_Os01g09510
Os.37611.2.S1_x_at--783--3091Chr01:4850958..4850982 (25 bp)
AATACCAGACTTTGCGCAGGAAACT
LOC_Os01g09510
Os.37611.2.S1_x_at--884--4111NONE
CGCAAGCATAAGGTGGTGGTTAACT
NONE
Os.37611.2.S1_x_at--26--9751NONE
TAATTGTGCCAGAAGTAGTTTAGCT
NONE
Os.37611.2.S1_x_at--492--1211NONE
AGTTTAGCTGTGTCATTATGGTCCT
NONE
Os.37611.2.S1_x_at--594--151NONE
ATTATGGTCCTATTGTCGGGTTATA
NONE
Target Sequence 
ATGGAACTCCTGTTGTCTCAAGTGAGTGGCAAGGACATCACTGAGCTCATCGCTTGTGGCAGGGAGAAGTTTGCTTCAGT
TCCATCTGGTGGTGGTGGTGTAGCTGTTGCTGCTGCTGCTCCTGCTGCCGGTGGTGCTGGTGGTGCTCCTGCAGCTGAGG
CGAAGAAAGAAGATAAGGTCGAAGAGAAGGAAGAAAGTGATGATGACATGGGCTTCAGTTTGTTTGACTGAGTGATGCGG
TCACCTCTTCTATCATCAATACCAGACTTTGCGCAGGAAACTAGAGTGATGATGTTTGGGATTTTAGCTTTTCTTCTTTA
ATTAAGTTGAAAACACTTGAGGAAAGACTATGGTTGCTAATATGTTTAGATATGTAGTAACGCAAGCATAAGGTGGTGGT
TAACTAATTGGGTGAACAAGGATTGGGGAATAAAAAACAAGGGTAACGGGGAGGTAATTGTGCCAGAAGTAGTTTAGCTG
TGTCATTATGGTCCTATTGTCGGGTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37611.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis