Browse Element(s) Details


Os.37641.1.S1_at

Description gb:AK073890.1
DB_XREF= gi:32983913
TID=Os.37641.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) CENPC-like protein (P0686E09.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075H13, full insert sequence.
FL= gb:AK073890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4305011/11CENP-C1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43030Os.11466.1.S1_at11/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43030Os.46676.1.A1_x_at1/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37641.1.S1_at--487--2351Chr01:24893932..24894071 (25 bp)
AAAGCTTGGCAGATGCGGGTCTTAC
LOC_Os01g43050
Os.37641.1.S1_at--843--3191Chr01:24895058..24895082 (25 bp)
CAATGGCCACAGTCATCGGTGTTAA
LOC_Os01g43050
Os.37641.1.S1_at--503--6771Chr01:24895078..24895102 (25 bp)
GTTAAATCATTCTCTCCTAGTCAGG
LOC_Os01g43050
Os.37641.1.S1_at--585--6131Chr01:24895119..24895143 (25 bp)
GAGGGTGAAATCCTTTGTTCCTGAA
LOC_Os01g43050
Os.37641.1.S1_at--1140--2131Chr01:24895143..24895167 (25 bp)
ACAGTTCTCAGATTTGTTAGCCGAA
LOC_Os01g43050
Os.37641.1.S1_at--201--6771Chr01:24895158..24895182 (25 bp)
GTTAGCCGAATCTGCCAAGTACTGA
LOC_Os01g43050
Os.37641.1.S1_at--319--3211Chr01:24895173..24895197 (25 bp)
CAAGTACTGAGGTCCTGGCCCGGGA
LOC_Os01g43050
Os.37641.1.S1_at--8--1251Chr01:24895225..24895249 (25 bp)
AGTTGCATTCTTCGACATGCATGGC
LOC_Os01g43050
Os.37641.1.S1_at--7--2111Chr01:24895239..24895263 (25 bp)
ACATGCATGGCTCGCGCAACCTGTG
LOC_Os01g43050
Os.37641.1.S1_at--424--6151Chr01:24895313..24895337 (25 bp)
GAGGTGCTTCCTCCTATATTGTAGA
LOC_Os01g43050
Os.37641.1.S1_at--90--5731Chr01:24895456..24895480 (25 bp)
GACTGCCCATTTTCATTTGTAGCTG
LOC_Os01g43050
Target Sequence 
AAAGCTTGGCAGATGCGGGTCTTACTTGGCAAGCGGGTGTTAGNCGAAGCACACGAATACGGTCAAAACCTTTGCAGCAT
TGGNCTTGGTGAAANATTTATATATGGGNCGTATACATGGAACAATGGCCACAGTCATCGGTGTTAAATCATTCTCTCCT
AGTCAGGAAGGCAAAGGCCCATTGAGGGTGAAATCCTTTGTTCCTGAACAGTTCTCAGATTTGTTAGCCGAATCTGCCAA
GTACTGAGGTCCTGGCCCGGGAAAGTCCCTATCTTCCTTTCTTTGGACNAGTTGCATTCTTCGACATGCATGGCTCGCGC
AACCTGTGATNTGTTCCGTATNTATGTGTTACTTTTGNTGNTAANTTTTCGTCNTTTGAGGTGCTTCCTCCTATATTGTA
GAGCTAACTCTGTGTAGAAGTGTTTGTATCTGTGGAGTTGCAGTGTAATGCATACATGCTATGAACTTGCATACATGATT
TATTTTTTTTAAAAGGAAGCTGCTCGGAGTCGGGGCCCGGGACTGCCCATTTTCATTTGTAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis