Browse Element(s) Details


Os.37641.2.S1_x_at

Description gb:NM_192808.1
DB_XREF= gi:34912699
GEN=P0686E09.20
TID=Os.37641.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37641 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) CENPC-like protein (P0686E09.20), mRNA.
PROD=CENPC-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4305010/11CENP-C1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43030Os.11466.1.S1_at11/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43030Os.46676.1.A1_x_at1/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein
LOC_Os01g43070Os.1500.2.S1_x_at10/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43070Os.1500.1.S1_at8/111+24899830..24902546oxygen-evolving complex, putative, expressed
LOC_Os01g43080Os.52056.1.S1_at11/111+24902574..24903707exonuclease family protein, expressed
LOC_Os01g43090Os.45885.1.S1_s_at11/111+24906478..24908925Auxin-induced protein PCNT115, putative, expressed
LOC_Os01g43100Os.32938.1.S1_x_at6/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43100Os.32938.1.S1_at2/111+24911502..24916161protein phosphatase 2C, putative, expressed
LOC_Os01g43110OsAffx.9127.2.S1_x_at11/111+24919360..24923065hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37641.2.S1_x_at--290--5192Chr01:24891671..24891695 (25 bp)
GCAATGCACTCTCCCCAAGTAAAGG
LOC_Os01g43050
Os.37641.2.S1_x_at--571--5611Chr01:24892332..24892356 (25 bp)
GACAACCTGATCCATACACCGGAAA
LOC_Os01g43050
Os.37641.2.S1_x_at--686--2111Chr01:24892380..24892404 (25 bp)
ACAGTACATACACCGGAAATTCCTC
LOC_Os01g43050
Os.37641.2.S1_x_at--152--6511Chr01:24892750..24892774 (25 bp)
GATATAAACAATGCACTCTCCCCAA
LOC_Os01g43050
Os.37641.2.S1_x_at--661--5112Chr01:24892762..24892786 (25 bp)
GCACTCTCCCCAAGTAAAGGCAAGG
LOC_Os01g43050
Os.37641.2.S1_x_at--773--8151Chr01:24893400..24893424 (25 bp)
GGAAACACACGCACCAAACTTTGAA
LOC_Os01g43050
Os.37641.2.S1_x_at--1107--6031Chr01:24893428..24893452 (25 bp)
GAGATTCAACCTCATGTGCAGGACA
LOC_Os01g43050
Os.37641.2.S1_x_at--1147--2131NONE
ACAGATGTTGAGATGCGGGTCTTAC
NONE
Os.37641.2.S1_x_at--397--3631Chr01:24894067..24894091 (25 bp)
CTTACTTGGCAAGCGGGTGTTAGAC
LOC_Os01g43050
Os.37641.2.S1_x_at--321--9931Chr01:24894104..24894128 (25 bp)
TACGGTCAAAACCTTTGCAGCATTG
LOC_Os01g43050
Os.37641.2.S1_x_at--1149--5051Chr01:24894120..24894144 (25 bp)
GCAGCATTGGCTTGGTGAAAGATTT
LOC_Os01g43050
Target Sequence 
GCAATGCACTCTCCCCAAGTAAAGGCAAGGAACAAAGAGGCAAAAATAAGAAGCAGCCATCGAAGAGAGGAAAAAGAAAG
ACAGACAACCTGATCCATACACCGGAAATACCCCCAGAAGATACAGACAACACAGTACATACACCGGAAATTCCTCCAGA
AGATACTTATCCACAGAATCAATCTGAAATACATCGTGGAAACACTGAGAAACTGGCAGTTGATATAAACAATGCACTCT
CCCCAAGTAAAGGCAAGGAACAAAGAGGAAACAATAAGAAGCAGCCATCAAAGCGACAAAAAAGAGCAGCAGGTGAGGCA
GGTGATTTGGAAACACACGCACCAAACTTTGAACCAGAGATTCAACCTCATGTGCAGGACACAGATGTTGAGATGCGGGT
CTTACTTGGCAAGCGGGTGTTAGACGAAGCACACGAATACGGTCAAAACCTTTGCAGCATTGGCTTGGTGAAAGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37641.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis