Browse Element(s) Details


Os.37726.1.A1_at

Description gb:AK072327.1
DB_XREF= gi:32982350
TID=Os.37726.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37726 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039P05, full insert sequence.
FL= gb:AK072327.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1344011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13390Os.17320.1.S2_at11/115+7411639..7417618expressed protein
LOC_Os05g13390Os.17320.1.S1_at11/115+7411639..7417618expressed protein
LOC_Os05g13400NANA5+7421842..7423178hypothetical protein
LOC_Os05g13410NANA5+7423842..7425258hypothetical protein
LOC_Os05g13420Os.30055.1.S1_x_at11/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_a_at7/115+7425652..7429603expressed protein
LOC_Os05g13420Os.27569.1.S1_x_at5/115+7425652..7429603expressed protein
LOC_Os05g13430OsAffx.4322.1.S1_x_at11/115+7430044..7431337hypothetical protein
LOC_Os05g13440Os.37726.1.A1_at11/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_a_at6/115+7434895..7440216expressed protein
LOC_Os05g13440Os.27569.1.S1_x_at4/115+7434895..7440216expressed protein
LOC_Os05g13450OsAffx.26864.1.S1_at11/115+7441734..7445321hypothetical protein
LOC_Os05g13460NANA5+7446701..7451097retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g13470OsAffx.4323.1.S1_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13470OsAffx.4323.2.S1_s_at11/115+7451909..7455013hypothetical protein
LOC_Os05g13480OsAffx.4324.1.S1_at11/115+7455783..7456355hypothetical protein
LOC_Os05g13490OsAffx.26865.1.S1_x_at11/115+7457337..7458666BURP domain containing protein
LOC_Os05g13490Os.28427.2.S1_x_at1/115+7457337..7458666BURP domain containing protein
LOC_Os05g13500OsAffx.14671.2.S1_at10/115+7461250..7463093hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37726.1.A1_at--720--9751Chr05:7436597..7436621 (25 bp)
TAATGAGATTGTGAACCGGCTGAAT
LOC_Os05g13440
Os.37726.1.A1_at--741--1091Chr05:7436564..7436588 (25 bp)
AGTGGAGCGCAAGCCTGACTTAAAG
LOC_Os05g13440
Os.37726.1.A1_at--1108--8291Chr05:7436046..7436069 (24 bp)
GGCTTAACATCTTTTGCTACAGCTG
LOC_Os05g13440
Os.37726.1.A1_at--767--5892Chr05:7435246..7435270 (25 bp)
GAGCTACAAGAACCTGATGGTCCAA
LOC_Os05g13440
Os.37726.1.A1_at--595--6312Chr05:7435216..7435240 (25 bp)
GATGACTTCCAACAAGCAGGTTGCA
LOC_Os05g13440
Os.37726.1.A1_at--914--2751Chr05:7435091..7435115 (25 bp)
AAGACAGGACAAGCATCGCCGGGTT
LOC_Os05g13440
Os.37726.1.A1_at--448--531Chr05:7435077..7435101 (25 bp)
ATCGCCGGGTTGCAAGCTTGGACAA
LOC_Os05g13440
Os.37726.1.A1_at--335--4172Chr05:7435033..7435057 (25 bp)
CGCCTTGACCTGTTATGCTACATAC
LOC_Os05g13440
Os.37726.1.A1_at--130--4851Chr05:7435017..7435041 (25 bp)
GCTACATACTCTAATTGGCCTGCAT
LOC_Os05g13440
Os.37726.1.A1_at--38--8472Chr05:7435002..7435026 (25 bp)
TGGCCTGCATTGACCTTGTTTGATG
LOC_Os05g13440
Os.37726.1.A1_at--368--1471Chr05:7434966..7434990 (25 bp)
AGCATTGTGTGATCTAACTGTGGTT
LOC_Os05g13440
Target Sequence 
TAATGAGATTGTGAACCGGCTGAATAAGACAAAAGTGGAGCGCAAGCCTGACTTAAAGGCTTAACATCTTTTGCTACAGC
TGAAAGAGAAGCTGTGAGTGCAGCAGAAAAGGCAGAGAGAAAGGTGCAGCTTAGAGATAAAAAACGTAGGGAAGAGATGG
AGAGGGTTGAGAAGGAGAAGCAGGCTGAAATCAGGAGCTACAAGAACCTGATGGTCCAAGAGAAGATGACTTCCAACAAG
CAGGTTGCATNTGGTAGCAAGACCTTGGAAGAACTAGAGGATGACTTCATGTGAGAAGACAAAATAACAAATTCATACTG
CCAGGGTTCTNTAAACTGTGTTTCTGTCAAAGACAGGACAAGCATCGCCGGGTTGCAAGCTTGGACAAGATGATTTNTGG
GCAGGGCCGCCTTGACCTGTTATGCTACATACTCTAATTGGCCTGCATTGACCTTGTTTGATGTGTTGAAACAAAGCATT
GTGTGATCTAACTGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37726.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis