Browse Element(s) Details


Os.37773.1.S1_at

Description gb:AU165294
DB_XREF= gi:11564658
DB_XREF=AU165294
CLONE=C63822
TID=Os.37773.1
CNT=25
FEA=mRNA
TIER=Stack
STK=11
UG=Os.37773 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OJ1364E02.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1603011/1117.4 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g15980OsAffx.31659.1.S1_s_at11/113+8788487..8788932hypothetical protein
LOC_Os03g15980OsAffx.31659.2.S1_at8/113+8788487..8788932hypothetical protein
LOC_Os03g15990OsAffx.25104.1.S1_at11/113+8794075..8796397hydroxyproline-rich glycoprotein family protein, putative
LOC_Os03g16000Os.34102.1.S1_a_at10/113+8798197..8803386Variant SH3 domain containing protein, expressed
LOC_Os03g16010Os.10798.1.S1_at11/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16010Os.26733.3.S1_x_at3/113+8806805..8812628protein kinase, putative, expressed
LOC_Os03g16020Os.22731.1.S1_at11/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.57467.1.S1_x_at6/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16020Os.37773.1.S1_x_at4/113+8812766..881352917.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_x_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.37773.1.S1_at11/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16030Os.57467.1.S1_x_at5/113+8813884..881465417.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.22730.1.S1_at11/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.37773.1.S1_x_at2/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16040Os.57467.1.S1_x_at1/113+8816812..881767617.4 kDa class I heat shock protein, putative, expressed
LOC_Os03g16050Os.11756.1.S1_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16050Os.11756.1.S1_s_at11/113+8820321..8822122Fructose-1,6-bisphosphatase, chloroplast precursor, putative, expressed
LOC_Os03g16060Os.49668.1.S1_at11/113+8830385..8833479lipase, putative, expressed
LOC_Os03g16070Os.9617.1.S1_at6/113+8833684..8838058expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37773.1.S1_at--755--1131Chr03:8814461..8814485 (25 bp)
AGTCCATCCAGGTTACCGGCTAGTA
LOC_Os03g16030
Os.37773.1.S1_at--362--4331Chr03:8814464..8814488 (25 bp)
CCATCCAGGTTACCGGCTAGTAAGA
LOC_Os03g16030
Os.37773.1.S1_at--837--4831Chr03:8814479..8814503 (25 bp)
GCTAGTAAGAAACTTCGGGTGTGAC
LOC_Os03g16030
Os.37773.1.S1_at--960--2731Chr03:8814485..8814509 (25 bp)
AAGAAACTTCGGGTGTGACATGCAC
LOC_Os03g16030
Os.37773.1.S1_at--799--2511Chr03:8814489..8814513 (25 bp)
AACTTCGGGTGTGACATGCACGGTG
LOC_Os03g16030
Os.37773.1.S1_at--39--9331Chr03:8814545..8814569 (25 bp)
TCAATTGCAGTAAATAAAAGCGTCA
LOC_Os03g16030
Os.37773.1.S1_at--680--2431Chr03:8814560..8814584 (25 bp)
AAAAGCGTCAAATCTGGTCCTCAGT
LOC_Os03g16030
Os.37773.1.S1_at--750--1631Chr03:8814563..8814587 (25 bp)
AGCGTCAAATCTGGTCCTCAGTGTT
LOC_Os03g16030
Os.37773.1.S1_at--869--3051Chr03:8814570..8814594 (25 bp)
AATCTGGTCCTCAGTGTTTATGCTG
LOC_Os03g16030
Os.37773.1.S1_at--844--7791Chr03:8814575..8814599 (25 bp)
GGTCCTCAGTGTTTATGCTGTGAAA
LOC_Os03g16030
Os.37773.1.S1_at--741--3451Chr03:8814581..8814605 (25 bp)
CAGTGTTTATGCTGTGAAAAAGTTC
LOC_Os03g16030
Target Sequence 
AGTCCATCCAGGTTACCGGCTAGTAAGAAACTTCGGGTGTGACATGCACGGTGGAGAGCTTCGATTCGAGNCTTCGGTTT
GTGATCAATTGCAGTAAATAAAAGCGTCAAATCTGGTCCTCAGTGTTTATGCTGTGAAAAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis