Browse Element(s) Details


Os.37927.1.S1_at

Description gb:AK071325.1
DB_XREF= gi:32981348
TID=Os.37927.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.37927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089P04, full insert sequence.
FL= gb:AK071325.1 gb:AK100437.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6902011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68970Os.10258.1.S1_at11/111+40397622..40400613CPR5 protein, putative, expressed
LOC_Os01g68980OsAffx.13846.2.S1_s_at11/111+40401081..40401700hypothetical protein
LOC_Os01g68980OsAffx.13846.1.S1_at4/111+40401081..40401700hypothetical protein
LOC_Os01g68990Os.52238.1.S1_at3/111+40404837..40409259retrotransposon, putative, centromere-specific
LOC_Os01g69000NANA1+40411243..40412598retrotransposon, putative, centromere-specific
LOC_Os01g69010OsAffx.19817.2.S1_at11/111+40420562..40423832MATE efflux family protein
LOC_Os01g69010OsAffx.19817.1.S1_x_at7/111+40420562..40423832MATE efflux family protein
LOC_Os01g69020Os.37927.1.S1_at11/111+40424504..40425877transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g69030Os.3454.1.S1_at10/111+40428272..40433444Sucrose-phosphate synthase, putative, expressed
LOC_Os01g69040Os.27953.2.S1_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g69040Os.27953.1.S1_x_at11/111+40442758..40447950Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37927.1.S1_at--409--5491Chr01:40424790..40424814 (25 bp)
GAACAGGCAGAACAGCTTCAGCATG
LOC_Os01g69020
Os.37927.1.S1_at--330--671Chr01:40424768..40424792 (25 bp)
ATGAACAGCGCGTGACCGTCTGATA
LOC_Os01g69020
Os.37927.1.S1_at--152--4151Chr01:40424713..40424737 (25 bp)
CGCGGCCGCATCAAACTGATGATTC
LOC_Os01g69020
Os.37927.1.S1_at--652--1971Chr01:40424699..40424723 (25 bp)
ACTGATGATTCTTAGTCCGGCTTCG
LOC_Os01g69020
Os.37927.1.S1_at--1086--9271Chr01:40424684..40424708 (25 bp)
TCCGGCTTCGTGTTGATCTTCCTGA
LOC_Os01g69020
Os.37927.1.S1_at--456--6431Chr01:40424670..40424694 (25 bp)
GATCTTCCTGATTAATTTTGTTCGT
LOC_Os01g69020
Os.37927.1.S1_at--79--6771Chr01:40424626..40424650 (25 bp)
GTTAATCTCTATTTGTTGCAGTTGC
LOC_Os01g69020
Os.37927.1.S1_at--215--10271Chr01:40424615..40424639 (25 bp)
TTTGTTGCAGTTGCATGCCATGCAT
LOC_Os01g69020
Os.37927.1.S1_at--184--9651Chr01:40424562..40424586 (25 bp)
TCAGTGTTCTTGTGTTTGTAATCTC
LOC_Os01g69020
Os.37927.1.S1_at--807--10811Chr01:40424547..40424571 (25 bp)
TTGTAATCTCTTGTTCTTCTTCGTG
LOC_Os01g69020
Os.37927.1.S1_at--423--6731Chr01:40424535..40424559 (25 bp)
GTTCTTCTTCGTGATCTCGGAGATA
LOC_Os01g69020
Target Sequence 
GAACAGGCAGAACAGCTTCAGCATGAACAGCGCGTGACCGTCTGATACCACCAACCCCGGCTGGTTGATCCTTNNNNCGC
GGCCGCATCAAACTGATGATTCTTAGTCCGGCTTCGTGTTGATCTTCCTGATTAATTTTGTTCGTGTGTTTTTAATTATT
TTTTGTTAATCTCTATTTGTTGCAGTTGCATGCCATGCATGCAGGCTTTTTTTCTTTCATCGAATCATTCAGTGTTCTTG
TGTTTGTAATCTCTTGTTCTTCTTCGTGATCTCGGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis