Browse Element(s) Details


Os.37945.1.S1_at

Description gb:AK102775.1
DB_XREF= gi:32987984
TID=Os.37945.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.37945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107H21, full insert sequence.
FL= gb:AK058525.1 gb:AK102775.1 gb:AK058689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4831010/1160S ribosomal protein L33-B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48280OsAffx.15144.1.S1_at6/115+27590665..27596587expressed protein
LOC_Os05g48290OsAffx.15145.1.S1_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290OsAffx.15145.1.S1_x_at11/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48290Os.8383.1.S1_at8/115+27600654..27605075T-complex protein 1, beta subunit, putative, expressed
LOC_Os05g48300Os.56339.1.S1_at10/115+27606734..27608169expressed protein
LOC_Os05g48310OsAffx.27366.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48310Os.37945.1.S1_at10/115+27612037..2761422160S ribosomal protein L33-B, putative, expressed
LOC_Os05g48320Os.11497.1.S1_at11/115+27616481..2761856960S ribosomal protein L37a, putative, expressed
LOC_Os05g48330OsAffx.23718.2.S1_x_at11/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48330OsAffx.23718.1.S1_x_at3/115+27618711..27622267Eukaryotic aspartyl protease family protein, expressed
LOC_Os05g48340Os.5594.1.S1_at11/115+27629080..27634433proteasome, putative, expressed
LOC_Os05g48350NANA5+27636556..27636801hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37945.1.S1_at--412--2411NONE
AAAAGCATCCAAGGTTTCTTGCCTA
NONE
Os.37945.1.S1_at--916--211Chr05:27613920..27613944 (25 bp)
ATTTGTATCGTGATCTCAGCCGTTT
LOC_Os05g48310
Os.37945.1.S1_at--975--6411Chr05:27613931..27613955 (25 bp)
GATCTCAGCCGTTTGATATCGTATC
LOC_Os05g48310
Os.37945.1.S1_at--361--7911Chr05:27613971..27613995 (25 bp)
GGTTGGCACTGCTCGTTGAGTATAT
LOC_Os05g48310
Os.37945.1.S1_at--495--7511Chr05:27614022..27614046 (25 bp)
GTGGTTCAGATATCTGGTGTCCAAT
LOC_Os05g48310
Os.37945.1.S1_at--19--7471Chr05:27614038..27614062 (25 bp)
GTGTCCAATCGAGAAGGTGGTCATT
LOC_Os05g48310
Os.37945.1.S1_at--965--2311Chr05:27614080..27614101 (22 bp)
AAAGGTACCTGATTTTTCTGCTGAT
LOC_Os05g48310
Os.37945.1.S1_at--285--5131Chr05:27614119..27614143 (25 bp)
GCACAAATGCTGGTGCCATTGCTGT
LOC_Os05g48310
Os.37945.1.S1_at--1125--4431Chr05:27614133..27614157 (25 bp)
GCCATTGCTGTAGTACTCCCTATAA
LOC_Os05g48310
Os.37945.1.S1_at--343--10651Chr05:27614169..27614193 (25 bp)
TTCCGAAGAGAAATGTACGCCCTAT
LOC_Os05g48310
Os.37945.1.S1_at--556--3451Chr05:27614197..27614221 (25 bp)
CAGGGATTCCCTAGTGTTTACACTT
LOC_Os05g48310
Target Sequence 
AAAAGCATCCAAGGTTTCTTGCCTATGCTGCGAAACTGATAGTTGTCACCGTGGAGGGTTTTATATCAGCTAGTCACTTG
GTTAACCAGTCAGAAATTTAAGCGGTTTTGAGGAGTTTTAGCTTTTCTTTTTATTTCGGACTATTTGCTGTATCATGATG
ACAATTATTTGAAGGCTTTTTAGCGGATTTGAAGCTACAGAGGTTTAGCATTTGTATCGTGATCTCAGCCGTTTGATATC
GTATCTGTATATCTAAATTTGGTTGGCACTGCTCGTTGAGTATATTTGAAAATGATAGGCAGATGGATTCAGTGGTTCAG
ATATCTGGTGTCCAATCGAGAAGGTGGTCATTTAGACGGACAAAAAAAAGGTACCTGATTTTTCTGCTGATTACTTAGTC
ATGACACAGCACAAATGCTGGTGCCATTGCTGTAGTACTCCCTATAATGCTGGAGTATTTCCGAAGAGAAATGTACGCCC
TATAATCAGGGATTCCCTAGTGTTTACACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis