Browse Element(s) Details


Os.37996.1.S1_at

Description gb:AK105175.1
DB_XREF= gi:32990384
TID=Os.37996.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0519E12.12 (P0519E12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H09, full insert sequence.
FL= gb:AK105175.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4380011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43760Os.28943.1.S1_x_at2/117+26181136..26184015retrotransposon protein, putative, unclassified
LOC_Os07g43770Os.12208.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43770OsAffx.5627.1.S1_at11/117+26186433..26188309expressed protein
LOC_Os07g43780OsAffx.22848.4.S1_at3/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43780OsAffx.22848.4.S1_x_at2/117+26196214..26197718retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43790NANA7+26198027..26202728retrotransposon protein, putative, unclassified
LOC_Os07g43800Os.37996.1.S1_at11/117+26206842..26207760EF hand family protein, expressed
LOC_Os07g43810Os.14271.1.S1_at11/117+26210054..2621214729 kDa ribonucleoprotein A, chloroplast precursor, putative, expressed
LOC_Os07g43820Os.41106.1.S1_at11/117+26213400..26214563Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os07g43830OsAffx.28890.1.S1_at9/117+26215878..26217250expressed protein
LOC_Os07g43840OsAffx.16703.1.S1_at11/117+26218558..26219429zinc finger family protein, putative
LOC_Os07g43850OsAffx.9073.1.S1_x_at11/117+26222448..26223728hypothetical protein
LOC_Os07g43850OsAffx.9073.2.S1_at7/117+26222448..26223728hypothetical protein
LOC_Os07g43860OsAffx.28891.1.S1_at11/117+26224214..26224846hypothetical protein
LOC_Os07g43870Os.23682.1.S1_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870Os.23682.1.S1_s_at11/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.18864.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.17544.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed
LOC_Os07g43870OsAffx.16132.1.S1_at1/117+26228989..26239156DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37996.1.S1_at--556--3391Chr07:26207493..26207517 (25 bp)
CAGCGTCGACGCCAGGATGAACTTG
LOC_Os07g43800
Os.37996.1.S1_at--186--6311Chr07:26207508..26207532 (25 bp)
GATGAACTTGTTCCAGTTCGTCAAG
LOC_Os07g43800
Os.37996.1.S1_at--780--9351Chr07:26207537..26207561 (25 bp)
TCGAGACCGGCCTCTGCTAATCAAG
LOC_Os07g43800
Os.37996.1.S1_at--597--8431Chr07:26207545..26207569 (25 bp)
GGCCTCTGCTAATCAAGGCTGATTA
LOC_Os07g43800
Os.37996.1.S1_at--661--6791Chr07:26207597..26207621 (25 bp)
GTTTTGGGTTCGTTGCACGGTGCAC
LOC_Os07g43800
Os.37996.1.S1_at--222--10751Chr07:26207609..26207633 (25 bp)
TTGCACGGTGCACGGCTCAGCTCGT
LOC_Os07g43800
Os.37996.1.S1_at--813--8611Chr07:26207655..26207679 (25 bp)
TGGTGTGTGTTGCAAATTTTCCTCT
LOC_Os07g43800
Os.37996.1.S1_at--350--10571Chr07:26207686..26207710 (25 bp)
TTCTTTTTCCTTCTGCGAGGCATGA
LOC_Os07g43800
Os.37996.1.S1_at--1149--911Chr07:26207703..26207727 (25 bp)
AGGCATGAGTTGGTGCTTTGTGCAA
LOC_Os07g43800
Os.37996.1.S1_at--134--4891Chr07:26207717..26207741 (25 bp)
GCTTTGTGCAACAATTAACGGACTA
LOC_Os07g43800
Os.37996.1.S1_at--172--2171Chr07:26207733..26207757 (25 bp)
AACGGACTAATCTGTCAATTAATTG
LOC_Os07g43800
Target Sequence 
CAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCCTCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATT
AATTTTTTTTCAATTTTTTTTTCCGTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCT
AGTGGTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGTGCTTTGTGCAACAATT
AACGGACTAATCTGTCAATTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis