Browse Element(s) Details


Os.38001.1.A1_at

Description gb:AK073434.1
DB_XREF= gi:32983457
TID=Os.38001.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042L19, full insert sequence.
FL= gb:AK073434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5803011/11leucine-rich repeat protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g57970OsAffx.24913.1.S1_at10/112+35495498..35495790hypothetical protein
LOC_Os02g57980Os.26581.1.S1_at11/112+35496214..35501173DEAD/DEAH box helicase family protein, expressed
LOC_Os02g57990Os.9687.1.S1_at11/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g57990Os.56368.1.S1_at3/112+35501294..35505007methionine adenosyltransferase regulatory beta subunit, putative, expressed
LOC_Os02g58000OsAffx.24914.1.S1_at11/112+35507203..35507472hypothetical protein
LOC_Os02g58010Os.13484.1.S1_at11/112+35509890..35511189expressed protein
LOC_Os02g58010OsAffx.24915.1.S1_at10/112+35509890..35511189expressed protein
LOC_Os02g58020Os.10758.1.S1_a_at11/112+35511679..35517489ABC transporter family protein, expressed
LOC_Os02g58030Os.38001.1.A1_at11/112+35520748..35527178leucine-rich repeat protein, putative, expressed
LOC_Os02g58040OsAffx.24916.1.S1_at10/112+35528270..35530261F-box domain containing protein
LOC_Os02g58050OsAffx.24917.1.S1_at11/112+35534428..35537623hypothetical protein
LOC_Os02g58060NANA2+35539057..35539365hypothetical protein
LOC_Os02g58070Os.8715.1.S1_at11/112+35539685..35542373oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os02g58080Os.26062.1.S1_a_at11/112+35543031..35547556sucrose transporter 2, putative, expressed
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38001.1.A1_at--648--2271Chr02:35521165..35521497 (25 bp)
AAATCCCCTCAGGAGCATACGGCGG
LOC_Os02g58030
Os.38001.1.A1_at--122--3571Chr02:35521150..35521174 (25 bp)
CATACGGCGGACTCTGCTGGAGCGA
LOC_Os02g58030
Os.38001.1.A1_at--832--711Chr02:35521044..35521068 (25 bp)
ATGTTTATTGATCAGTTCGGCCCTC
LOC_Os02g58030
Os.38001.1.A1_at--570--5451Chr02:35521017..35521041 (25 bp)
GAACTGCAGTTACCTTTTCCTGGAG
LOC_Os02g58030
Os.38001.1.A1_at--382--8551Chr02:35520997..35521021 (25 bp)
TGGAGTCCATTTATCCCCAAATTGT
LOC_Os02g58030
Os.38001.1.A1_at--1063--10271Chr02:35520950..35520974 (25 bp)
TTTGCTTGGCTATCTTCTTGGTGAT
LOC_Os02g58030
Os.38001.1.A1_at--611--8611Chr02:35520932..35520956 (25 bp)
TGGTGATCGTTATCATTCTCCTCAT
LOC_Os02g58030
Os.38001.1.A1_at--534--111Chr02:35520918..35520942 (25 bp)
ATTCTCCTCATTTTATCCGCGGATT
LOC_Os02g58030
Os.38001.1.A1_at--319--10431Chr02:35520906..35520930 (25 bp)
TTATCCGCGGATTGCTGTCACACTG
LOC_Os02g58030
Os.38001.1.A1_at--1045--10391Chr02:35520807..35520831 (25 bp)
TTTTGACACTGGAAGTCCCGCACGT
LOC_Os02g58030
Os.38001.1.A1_at--705--471Chr02:35520772..35520796 (25 bp)
ATCTGCCGCCACAAGTGAAACTTTG
LOC_Os02g58030
Target Sequence 
AAATCCCCTCAGGAGCATACGGCGGACTCTGCTGGAGCGAGGAACGAAAGCAATTNTGAAGTATCTCAAAGAAAAGCTAC
CTGCTGAATAAATTCTGGTGGGAATTAATGTATGCTGCATGATGTTTATTGATCAGTTCGGCCCTCTCGAACTGCAGTTA
CCTTTTCCTGGAGTCCATTTATCCCCAAATTGTTTTTTCCTTGATTGATGTAATTTTTGCTTGGCTATCTTCTTGGTGAT
CGTTATCATTCTCCTCATTTTATCCGCGGATTGCTGTCACACTGAAAGCTTNTCAGCTTGTGTATAACCAACCTTGTATG
CAGTATACAGCAGATCAGAATTCGGTTATGTTGTAGTATTTTGACACTGGAAGTCCCGCACGTGTGAAAAAAAATCTGCC
GCCACAAGTGAAACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38001.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis